Variant report

Variant	rs78967590
Chromosome Location	chr12:40875172-40875173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40872855-40879178	NONHSAT027728

Extended variants
information (count: 76 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1848303	chr12:40867011-40887238	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1850439	chr12:40867211-40887867	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv20428	chr12:40867874-40884927	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3390786	chr12:40871685-40877783	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv3500652	chr12:40872785-40877883	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	esv1827225	chr12:40873026-40894172	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1833623	chr12:40873026-40894172	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv821471	chr12:40873057-40885132	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv16680	chr12:40873057-40885157	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1816871	chr12:40873251-40875695	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
12	nsv511492	chr12:40873251-40876644	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv558607	chr12:40873763-40875983	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
14	nsv558608	chr12:40873808-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
15	nsv558609	chr12:40874088-40875476	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
16	nsv558610	chr12:40874088-40882121	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
17	nsv558611	chr12:40874339-40875351	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
18	nsv558612	chr12:40874339-40875605	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
19	nsv558613	chr12:40874339-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
20	nsv558614	chr12:40874339-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
21	nsv558615	chr12:40874339-40878452	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
22	esv2537704	chr12:40874370-40878297	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	esv9331	chr12:40874517-40876753	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
24	esv2244044	chr12:40874546-40876757	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
25	esv2383828	chr12:40874590-40876575	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
26	esv3500630	chr12:40874658-40876532	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
27	esv3500641	chr12:40874663-40876501	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
28	esv3500663	chr12:40874663-40876501	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
29	esv3496031	chr12:40874680-40876512	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
30	esv3496032	chr12:40874680-40876512	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv826341	chr12:40874766-40875921	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	esv17196	chr12:40874832-40875986	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
33	nsv558616	chr12:40874860-40875351	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
34	nsv558617	chr12:40874860-40875580	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
35	nsv558618	chr12:40874860-40875695	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
36	nsv558619	chr12:40874860-40875917	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
37	nsv558620	chr12:40874860-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
38	nsv558621	chr12:40874860-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
39	nsv558622	chr12:40874860-40876644	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
40	nsv558623	chr12:40874860-40877007	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
41	nsv558624	chr12:40874860-40879854	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
42	nsv558625	chr12:40874860-40880060	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
43	nsv558626	chr12:40874860-40880558	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
44	esv1809170	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
45	esv1826427	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
46	nsv558627	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
47	esv1820410	chr12:40874860-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv558628	chr12:40874860-40883745	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	esv1834493	chr12:40874860-40884744	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
50	nsv558629	chr12:40874912-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40873800-40875800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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