Variant report

Variant	nsv562766
Chromosome Location	chr13:95364375-95365771
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:75)
CpG islands
(count:856)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:75 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr13:95364963-95365163	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr13:95365386-95365631	H1-hESC	embryonic stem cell:	n/a	n/a
3	CHD1	chr13:95364549-95365677	H1-hESC	embryonic stem cell:	n/a	n/a
4	CHD2	chr13:95365216-95365218	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTBP2	chr13:95363183-95366208	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr13:95365315-95365318	Gliobla	brain:	n/a	n/a
7	CTCF	chr13:95365292-95365300	Fibrobl	skin:	n/a	n/a
8	CTCF	chr13:95365300-95365450	HUVEC	blood vessel:	n/a	n/a
9	CTCF	chr13:95365269-95365278	Fibrobl	skin:	n/a	n/a
10	CTCF	chr13:95364540-95364690	HUVEC	blood vessel:	n/a	n/a
11	CTCF	chr13:95365120-95365270	AG04449	skin:	n/a	n/a
12	CTCF	chr13:95365260-95365410	NHEK	skin:	n/a	n/a
13	CTCF	chr13:95365277-95365430	MCF-7	breast:	n/a	n/a
14	CTCF	chr13:95365269-95365314	Gliobla	brain:	n/a	n/a
15	CTCF	chr13:95365259-95365361	MCF-7	breast:	n/a	n/a
16	CTCF	chr13:95365204-95365408	MCF-7	breast:	n/a	n/a
17	CTCF	chr13:95365260-95365410	WERI-Rb-1	eye:	n/a	n/a
18	E2F6	chr13:95363053-95365124	H1-hESC	embryonic stem cell:	n/a	chr13:95364327-95364336 chr13:95364744-95364753 chr13:95364745-95364755 chr13:95364315-95364325 chr13:95364428-95364440
19	E2F6	chr13:95364296-95364510	K562	blood:	n/a	chr13:95364327-95364336 chr13:95364315-95364325 chr13:95364428-95364440
20	E2F6	chr13:95364646-95364802	K562	blood:	n/a	chr13:95364744-95364753 chr13:95364745-95364755
21	E2F6	chr13:95363086-95365042	H1-hESC	embryonic stem cell:	n/a	chr13:95364327-95364336 chr13:95364744-95364753 chr13:95364745-95364755 chr13:95364315-95364325 chr13:95364428-95364440
22	E2F6	chr13:95364524-95364975	A549	lung:	n/a	chr13:95364744-95364753 chr13:95364745-95364755
23	HMGN3	chr13:95365140-95365366	K562	blood:	n/a	n/a
24	KAP1	chr13:95364844-95365672	HEK293	kidney:	n/a	n/a
25	MAX	chr13:95364465-95365680	H1-hESC	embryonic stem cell:	n/a	n/a
26	MAX	chr13:95363077-95364458	H1-hESC	embryonic stem cell:	n/a	chr13:95364328-95364338 chr13:95364441-95364451
27	MAX	chr13:95363759-95364386	ECC-1	luminal epithelium:	n/a	chr13:95364328-95364338
28	MAX	chr13:95363136-95365718	A549	lung:	n/a	chr13:95364328-95364338 chr13:95364441-95364451
29	MAX	chr13:95363043-95366255	H1-hESC	embryonic stem cell:	n/a	chr13:95364328-95364338 chr13:95365842-95365852 chr13:95364441-95364451
30	MAX	chr13:95364576-95365070	A549	lung:	n/a	n/a
31	MAX	chr13:95364535-95365769	ECC-1	luminal epithelium:	n/a	n/a
32	MAX	chr13:95364487-95365256	ECC-1	luminal epithelium:	n/a	n/a
33	MXI1	chr13:95364694-95365481	H1-hESC	embryonic stem cell:	n/a	n/a
34	MYC	chr13:95365276-95365302	MCF-7	breast:	n/a	n/a
35	MYC	chr13:95365087-95365522	MCF-7	breast:	n/a	n/a
36	MYC	chr13:95365603-95365609	MCF-7	breast:	n/a	n/a
37	MYC	chr13:95365561-95365569	MCF-7	breast:	n/a	n/a
38	NRF1	chr13:95365386-95365411	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr13:95365014-95365770	A549	lung:	n/a	n/a
40	POLR2A	chr13:95364918-95364928	MCF-7	breast:	n/a	n/a
41	POLR2A	chr13:95365417-95365916	A549	lung:	n/a	n/a
42	POLR2A	chr13:95365367-95365821	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr13:95364848-95365727	PBDE	blood:	n/a	n/a
44	POLR2A	chr13:95365038-95365361	A549	lung:	n/a	n/a
45	POLR2A	chr13:95364688-95365166	H1-hESC	embryonic stem cell:	n/a	n/a
46	POLR2A	chr13:95365103-95365109	A549	lung:	n/a	n/a
47	POLR2A	chr13:95365154-95365204	MCF-7	breast:	n/a	n/a
48	POLR2A	chr13:95365440-95365814	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr13:95365190-95365310	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr13:95365484-95365781	ECC-1	luminal epithelium:	n/a	n/a

(count:856 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:95364675-95364725	HAEpiC	amniotic membrane:	n/a
2	chr13:95364928-95364978	BJ	skin:	n/a
3	chr13:95364675-95364725	HAEpiC	amniotic membrane:	n/a
4	chr13:95364928-95364978	BJ	skin:	n/a
5	chr13:95364915-95364965	SAEC	small airway:	n/a
6	chr13:95364908-95364958	HEK293	kidney:	embryo
7	chr13:95364510-95364560	CMK	blood:	n/a
8	chr13:95364928-95364978	NHBE	bronchial:	n/a
9	chr13:95364675-95364725	U87	brain:	n/a
10	chr13:95364333-95364383	ovcar-3	ovarian:	n/a
11	chr13:95364586-95364636	SAEC	small airway:	n/a
12	chr13:95365509-95365559	GM19239	blood:	n/a
13	chr13:95364928-95364978	Hela-S3	cervix:	n/a
14	chr13:95364510-95364560	NHDF-neo	bronchial:	n/a
15	chr13:95364908-95364958	U87	brain:	n/a
16	chr13:95364514-95364564	HRE	kidney:	n/a
17	chr13:95364915-95364965	HMEC	breast:	n/a
18	chr13:95364586-95364636	HCPEpiC	choroid plexus:	n/a
19	chr13:95364915-95364965	HRCEpiC	kidney:	n/a
20	chr13:95364915-95364965	HAEpiC	amniotic membrane:	n/a
21	chr13:95364908-95364958	HUVEC	blood vessel:	n/a
22	chr13:95364928-95364978	ECC-1	luminal epithelium:	n/a
23	chr13:95364510-95364560	GM19239	blood:	n/a
24	chr13:95364510-95364560	HUVEC	blood vessel:	n/a
25	chr13:95364675-95364725	AoSMC	blood vessel:	n/a
26	chr13:95364675-95364725	HRPEpiC	eye:	n/a
27	chr13:95364675-95364725	Hepatocyte	liver:	n/a
28	chr13:95364586-95364636	HL-60	blood:	n/a
29	chr13:95364993-95365043	BJ	skin:	n/a
30	chr13:95364633-95364683	Caco-2	colon:	n/a
31	chr13:95364569-95364619	AoSMC	blood vessel:	n/a
32	chr13:95365509-95365559	NH-A	brain:	n/a
33	chr13:95364993-95365043	NT2-D1	testis:	n/a
34	chr13:95364510-95364560	HRE	kidney:	n/a
35	chr13:95364586-95364636	T-47D	breast:	n/a
36	chr13:95364993-95365043	GM12878	blood:	n/a
37	chr13:95364915-95364965	T-47D	breast:	n/a
38	chr13:95364993-95365043	MCF10A-Er-Src	breast:	n/a
39	chr13:95364510-95364560	LNCaP	prostate:	n/a
40	chr13:95364921-95364971	NHBE	bronchial:	n/a
41	chr13:95364928-95364978	HCF	heart:	n/a
42	chr13:95364915-95364965	HepG2	liver:	n/a
43	chr13:95364921-95364971	GM12891	blood:	n/a
44	chr13:95364569-95364619	NHDF-neo	bronchial:	n/a
45	chr13:95364586-95364636	GM19239	blood:	n/a
46	chr13:95364514-95364564	BE2_C	brain:	n/a
47	chr13:95364675-95364725	GM12892	blood:	n/a
48	chr13:95365673-95365723	NHBE	bronchial:	n/a
49	chr13:95365673-95365723	CMK	blood:	n/a
50	chr13:95364569-95364619	NHBE	bronchial:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:95363939..95364459-chr9:139760451..139760979,2	MCF-7	breast:
2	chr13:95359884..95364398-chr13:95364758..95367708,4	MCF-7	breast:
3	chr13:95359884..95364398-chr13:95364758..95367708,4	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR180-1	chr13:95364970-95365647	XLOC_010472
2	lnc-GPR180-1	chr13:95364970-95365647	NR_046514
3	lnc-GPR180-1	chr13:95364970-95365647	ENSG00000227640.2

No data

Variant related genes	Relation type
SOX21-AS1	TF binding region
SOX21	TF binding region
SOX21-AS1	CpG island
SOX21	CpG island
ENSG00000125285	chromatin interactions
ENSG00000227640	chromatin interactions
ENSG00000107223	chromatin interactions

Extended variants
information (count: 31 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566933282	chr13:95364386-95364387	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs535897216	chr13:95364422-95364423	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs552696035	chr13:95364479-95364480	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
4	rs34473201	chr13:95364532-95364533	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island	2 gene(s)	Overlapped CNVs	n/a
5	rs572982778	chr13:95364537-95364538	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island	2 gene(s)	Overlapped CNVs	n/a
6	rs544911228	chr13:95364647-95364648	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island	2 gene(s)	Overlapped CNVs	n/a
7	rs558793967	chr13:95364650-95364651	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island	2 gene(s)	Overlapped CNVs	n/a
8	rs575421624	chr13:95364678-95364679	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island	2 gene(s)	Overlapped CNVs	n/a
9	rs113884382	chr13:95364752-95364753	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
10	rs546258366	chr13:95364776-95364777	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs118036266	chr13:95364805-95364806	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs563636104	chr13:95364817-95364818	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs370452541	chr13:95364898-95364899	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs371301783	chr13:95364917-95364918	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs559633381	chr13:95364970-95364971	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
16	rs528662044	chr13:95364977-95364978	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs147993950	chr13:95364982-95364983	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs551643199	chr13:95364999-95365000	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs536137591	chr13:95365024-95365025	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
20	rs531069791	chr13:95365041-95365042	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
21	rs112625992	chr13:95365053-95365054	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
22	rs9301991	chr13:95365145-95365146	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs535883186	chr13:95365243-95365244	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
24	rs191866061	chr13:95365265-95365266	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
25	rs566473799	chr13:95365287-95365288	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
26	rs538748817	chr13:95365292-95365293	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs558434340	chr13:95365450-95365451	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs141617711	chr13:95365585-95365586	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs61966960	chr13:95365628-95365629	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
30	rs150598097	chr13:95365662-95365663	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs372167724	chr13:95365699-95365700	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Rhabdomyosarcoma	17210683	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	19651601	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:242 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95358800-95366200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:95359000-95368000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:95359200-95366600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95359600-95366000	Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr13:95359600-95366400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95361800-95366000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr13:95362200-95366000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr13:95362400-95366200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr13:95362400-95366200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr13:95362400-95366600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr13:95362400-95366800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
12	chr13:95362600-95364800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:95362600-95365200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:95362600-95366200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr13:95362600-95366200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
16	chr13:95362600-95366400	Active TSS	Brain Substantia Nigra	brain
17	chr13:95362800-95365800	Bivalent Enhancer	Spleen	Spleen
18	chr13:95362800-95366000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr13:95362800-95366400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
20	chr13:95362800-95366800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr13:95363000-95364600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr13:95363000-95365800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr13:95363000-95366200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr13:95363000-95366200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr13:95363000-95366400	Bivalent/Poised TSS	NHEK	skin
26	chr13:95363000-95366600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
27	chr13:95363200-95364400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:95363200-95364400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
29	chr13:95363200-95364400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
30	chr13:95363200-95364400	Flanking Bivalent TSS/Enh	HMEC	breast
31	chr13:95363200-95364600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
32	chr13:95363200-95365000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:95363200-95365000	Bivalent Enhancer	Lung	lung
34	chr13:95363200-95365000	Flanking Bivalent TSS/Enh	Ovary	ovary
35	chr13:95363200-95365400	Flanking Bivalent TSS/Enh	Right Ventricle	heart
36	chr13:95363200-95365600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
37	chr13:95363200-95366200	Bivalent Enhancer	Placenta	Placenta
38	chr13:95363200-95366200	Bivalent/Poised TSS	Stomach Mucosa	stomach
39	chr13:95363400-95364800	Bivalent/Poised TSS	Esophagus	oesophagus
40	chr13:95363400-95365200	Enhancers	Fetal Heart	heart
41	chr13:95363400-95365200	Bivalent Enhancer	Fetal Thymus	thymus
42	chr13:95363400-95365600	Active TSS	Aorta	Aorta
43	chr13:95363400-95365600	Bivalent/Poised TSS	NHLF	lung
44	chr13:95363400-95366000	Enhancers	Liver	Liver
45	chr13:95363400-95366400	Bivalent/Poised TSS	Fetal Brain Female	brain
46	chr13:95363600-95364600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
47	chr13:95363600-95364600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
48	chr13:95363600-95365000	Bivalent/Poised TSS	Psoas Muscle	Psoas
49	chr13:95363600-95366200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr13:95363600-95367000	Active TSS	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links