Variant report

Variant	rs535897216
Chromosome Location	chr13:95364422-95364423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr13:95363903-95366238	H1-hESC	embryonic stem cell:	n/a	chr13:95364649-95364660 chr13:95364957-95364966
2	SIN3AK20	chr13:95364223-95364529	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr13:95363086-95365042	H1-hESC	embryonic stem cell:	n/a	chr13:95364327-95364336 chr13:95364744-95364753 chr13:95364745-95364755 chr13:95364315-95364325 chr13:95364428-95364440
4	MAX	chr13:95363043-95366255	H1-hESC	embryonic stem cell:	n/a	chr13:95364328-95364338 chr13:95365842-95365852 chr13:95364441-95364451
5	E2F6	chr13:95364296-95364510	K562	blood:	n/a	chr13:95364327-95364336 chr13:95364315-95364325 chr13:95364428-95364440
6	MAX	chr13:95363136-95365718	A549	lung:	n/a	chr13:95364328-95364338 chr13:95364441-95364451
7	ZNF263	chr13:95363302-95366442	HEK293-T-REx	kidney:	n/a	chr13:95365861-95365870 chr13:95364830-95364851 chr13:95365858-95365867 chr13:95364868-95364889 chr13:95364662-95364671 chr13:95365767-95365776
8	CTBP2	chr13:95363183-95366208	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr13:95363077-95364458	H1-hESC	embryonic stem cell:	n/a	chr13:95364328-95364338 chr13:95364441-95364451
10	E2F6	chr13:95363053-95365124	H1-hESC	embryonic stem cell:	n/a	chr13:95364327-95364336 chr13:95364744-95364753 chr13:95364745-95364755 chr13:95364315-95364325 chr13:95364428-95364440

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95363939..95364459-chr9:139760451..139760979,2	MCF-7	breast:

Variant related genes	Relation type
SOX21-AS1	TF binding region
SOX21	TF binding region
ENSG00000107223	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv826750	chr13:95358502-95368070	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3407787	chr13:95362576-95365124	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1054343	chr13:95362727-95395486	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3446235	chr13:95362851-95366749	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv21011	chr13:95363104-95365838	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3442696	chr13:95363176-95365724	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv562760	chr13:95363617-95365119	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv562761	chr13:95363617-95365251	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv562762	chr13:95363617-95365381	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv562763	chr13:95363617-95365719	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv1795447	chr13:95363617-95365771	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv1806096	chr13:95363617-95365771	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv1838082	chr13:95363617-95365771	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv562764	chr13:95363792-95365596	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv562765	chr13:95363998-95365719	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	esv1795090	chr13:95363998-95365771	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv562766	chr13:95364375-95365771	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95358800-95366200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:95359000-95368000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:95359200-95366600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95359600-95366000	Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr13:95359600-95366400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95361800-95366000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr13:95362200-95366000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr13:95362400-95366200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr13:95362400-95366200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr13:95362400-95366600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr13:95362400-95366800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
12	chr13:95362600-95364800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:95362600-95365200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:95362600-95366200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr13:95362600-95366200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
16	chr13:95362600-95366400	Active TSS	Brain Substantia Nigra	brain
17	chr13:95362800-95365800	Bivalent Enhancer	Spleen	Spleen
18	chr13:95362800-95366000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr13:95362800-95366400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
20	chr13:95362800-95366800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr13:95363000-95364600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr13:95363000-95365800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr13:95363000-95366200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr13:95363000-95366200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr13:95363000-95366400	Bivalent/Poised TSS	NHEK	skin
26	chr13:95363000-95366600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
27	chr13:95363200-95364600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
28	chr13:95363200-95365000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr13:95363200-95365000	Bivalent Enhancer	Lung	lung
30	chr13:95363200-95365000	Flanking Bivalent TSS/Enh	Ovary	ovary
31	chr13:95363200-95365400	Flanking Bivalent TSS/Enh	Right Ventricle	heart
32	chr13:95363200-95365600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
33	chr13:95363200-95366200	Bivalent Enhancer	Placenta	Placenta
34	chr13:95363200-95366200	Bivalent/Poised TSS	Stomach Mucosa	stomach
35	chr13:95363400-95364800	Bivalent/Poised TSS	Esophagus	oesophagus
36	chr13:95363400-95365200	Enhancers	Fetal Heart	heart
37	chr13:95363400-95365200	Bivalent Enhancer	Fetal Thymus	thymus
38	chr13:95363400-95365600	Active TSS	Aorta	Aorta
39	chr13:95363400-95365600	Bivalent/Poised TSS	NHLF	lung
40	chr13:95363400-95366000	Enhancers	Liver	Liver
41	chr13:95363400-95366400	Bivalent/Poised TSS	Fetal Brain Female	brain
42	chr13:95363600-95364600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
43	chr13:95363600-95364600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
44	chr13:95363600-95365000	Bivalent/Poised TSS	Psoas Muscle	Psoas
45	chr13:95363600-95366200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:95363600-95367000	Active TSS	Brain Anterior Caudate	brain
47	chr13:95363600-95367800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:95363800-95365200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
49	chr13:95363800-95365200	Bivalent Enhancer	Fetal Intestine Small	intestine
50	chr13:95363800-95365800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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