Variant report

Variant	nsv569524
Chromosome Location	chr15:55558624-55612511
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2079)
CpG islands
(count:2140)
Chromatin interactive
region (count:88)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2079 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:55611806-55612064	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:55571287-55572489	K562	blood:	n/a	n/a
3	ARID3A	chr15:55611213-55612063	K562	blood:	n/a	n/a
4	ARID3A	chr15:55578355-55578439	K562	blood:	n/a	n/a
5	ARID3A	chr15:55611067-55611566	HepG2	liver:	n/a	n/a
6	ARID3A	chr15:55574357-55574917	K562	blood:	n/a	n/a
7	ARID3A	chr15:55582683-55582974	HepG2	liver:	n/a	n/a
8	ARID3A	chr15:55582501-55582999	K562	blood:	n/a	n/a
9	ARID3A	chr15:55576575-55577009	K562	blood:	n/a	n/a
10	ARID3A	chr15:55559634-55560031	K562	blood:	n/a	n/a
11	ARID3A	chr15:55571700-55572175	HepG2	liver:	n/a	n/a
12	ATF1	chr15:55578747-55579084	K562	blood:	n/a	n/a
13	ATF1	chr15:55612137-55612498	K562	blood:	n/a	n/a
14	ATF1	chr15:55571782-55572252	K562	blood:	n/a	n/a
15	ATF1	chr15:55574440-55574824	K562	blood:	n/a	n/a
16	ATF1	chr15:55611017-55611627	K562	blood:	n/a	n/a
17	ATF2	chr15:55582700-55583050	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr15:55571687-55572736	GM12878	blood:	n/a	n/a
19	ATF2	chr15:55569066-55569831	GM12878	blood:	n/a	n/a
20	ATF2	chr15:55571619-55572737	GM12878	blood:	n/a	n/a
21	ATF2	chr15:55582132-55582686	GM12878	blood:	n/a	n/a
22	ATF2	chr15:55611262-55611615	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr15:55568824-55569817	GM12878	blood:	n/a	n/a
24	ATF2	chr15:55581834-55583029	GM12878	blood:	n/a	n/a
25	ATF2	chr15:55610849-55611625	GM12878	blood:	n/a	n/a
26	ATF2	chr15:55610860-55611517	GM12878	blood:	n/a	n/a
27	ATF3	chr15:55574419-55574817	K562	blood:	n/a	n/a
28	ATF3	chr15:55571773-55572313	K562	blood:	n/a	n/a
29	ATF3	chr15:55559648-55559988	K562	blood:	n/a	n/a
30	ATF3	chr15:55611075-55611605	A549	lung:	n/a	n/a
31	ATF3	chr15:55582555-55583026	A549	lung:	n/a	n/a
32	ATF3	chr15:55611094-55611636	A549	lung:	n/a	n/a
33	ATF3	chr15:55571938-55572177	K562	blood:	n/a	n/a
34	BACH1	chr15:55571797-55572568	K562	blood:	n/a	chr15:55572032-55572046
35	BACH1	chr15:55582697-55583094	H1-hESC	embryonic stem cell:	n/a	n/a
36	BACH1	chr15:55582872-55582986	K562	blood:	n/a	n/a
37	BATF	chr15:55569207-55569657	GM12878	blood:	n/a	n/a
38	BATF	chr15:55571852-55572569	GM12878	blood:	n/a	chr15:55572036-55572046
39	BATF	chr15:55611209-55611468	GM12878	blood:	n/a	n/a
40	BATF	chr15:55569137-55569735	GM12878	blood:	n/a	n/a
41	BATF	chr15:55571856-55572580	GM12878	blood:	n/a	chr15:55572036-55572046
42	BATF	chr15:55610929-55611200	GM12878	blood:	n/a	n/a
43	BCL11A	chr15:55569181-55569757	GM12878	blood:	n/a	n/a
44	BCL11A	chr15:55569282-55569581	GM12878	blood:	n/a	n/a
45	BCL11A	chr15:55571804-55572354	GM12878	blood:	n/a	chr15:55572035-55572044 chr15:55572034-55572043
46	BCL3	chr15:55569219-55569624	GM12878	blood:	n/a	n/a
47	BCL3	chr15:55569194-55569696	GM12878	blood:	n/a	n/a
48	BCL3	chr15:55571860-55572647	GM12878	blood:	n/a	chr15:55572035-55572044 chr15:55572034-55572043
49	BCL3	chr15:55611036-55612055	A549	lung:	n/a	n/a
50	BCL3	chr15:55571818-55572758	GM12878	blood:	n/a	chr15:55572035-55572044 chr15:55572034-55572043

(count:2140 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:55562773-55562823	PrEC	prostate:	n/a
2	chr15:55611086-55611136	AoSMC	blood vessel:	n/a
3	chr15:55582808-55582858	U87	brain:	n/a
4	chr15:55611099-55611149	GM12891	blood:	n/a
5	chr15:55582159-55582209	RPTEC	kidney:	n/a
6	chr15:55562773-55562823	PrEC	prostate:	n/a
7	chr15:55611086-55611136	AoSMC	blood vessel:	n/a
8	chr15:55582808-55582858	U87	brain:	n/a
9	chr15:55611099-55611149	GM12891	blood:	n/a
10	chr15:55582159-55582209	RPTEC	kidney:	n/a
11	chr15:55579397-55579447	PFSK-1	brain:	n/a
12	chr15:55581420-55581470	BE2_C	brain:	n/a
13	chr15:55611086-55611136	SKMC	muscle:	n/a
14	chr15:55579397-55579447	AG09319	gingival:	n/a
15	chr15:55611214-55611264	NT2-D1	testis:	n/a
16	chr15:55582394-55582444	SK-N-SH	brain:	n/a
17	chr15:55562403-55562453	CMK	blood:	n/a
18	chr15:55564203-55564253	MCF-7	breast:	n/a
19	chr15:55582159-55582209	ECC-1	luminal epithelium:	n/a
20	chr15:55579397-55579447	HAEpiC	amniotic membrane:	n/a
21	chr15:55582165-55582215	NHBE	bronchial:	n/a
22	chr15:55579397-55579447	HCF	heart:	n/a
23	chr15:55581420-55581470	T-47D	breast:	n/a
24	chr15:55582165-55582215	AG04449	skin:	fetal
25	chr15:55559759-55559809	HMEC	breast:	n/a
26	chr15:55581420-55581470	HRCEpiC	kidney:	n/a
27	chr15:55563294-55563344	K562	blood:	n/a
28	chr15:55611440-55611490	H1-hESC	embryonic stem cell:	embryo
29	chr15:55611440-55611490	PANC-1	pancreas:	n/a
30	chr15:55581420-55581470	GM19239	blood:	n/a
31	chr15:55582248-55582298	ovcar-3	ovarian:	n/a
32	chr15:55585235-55585285	BE2_C	brain:	n/a
33	chr15:55582159-55582209	CMK	blood:	n/a
34	chr15:55562403-55562453	RPTEC	kidney:	n/a
35	chr15:55611305-55611355	HCM	heart:	n/a
36	chr15:55564203-55564253	MCF10A-Er-Src	breast:	n/a
37	chr15:55582494-55582544	AG09319	gingival:	n/a
38	chr15:55611214-55611264	MCF10A-Er-Src	breast:	n/a
39	chr15:55562403-55562453	HAEpiC	amniotic membrane:	n/a
40	chr15:55582248-55582298	HL-60	blood:	n/a
41	chr15:55611214-55611264	HL-60	blood:	n/a
42	chr15:55582159-55582209	SK-N-SH	brain:	n/a
43	chr15:55608323-55608373	AG04449	skin:	fetal
44	chr15:55611881-55611931	NH-A	brain:	n/a
45	chr15:55611881-55611931	HCT-116	colon:	n/a
46	chr15:55611607-55611657	HCPEpiC	choroid plexus:	n/a
47	chr15:55611321-55611371	NHBE	bronchial:	n/a
48	chr15:55582159-55582209	PFSK-1	brain:	n/a
49	chr15:55610624-55610674	GM12891	blood:	n/a
50	chr15:55610624-55610674	HMEC	breast:	n/a

(count:88 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr15:55550859..55553459-chr15:55571024..55573794,2	K562	blood:
2	chr1:28975054..28975618-chr15:55610819..55611592,2	Hela-S3	cervix:
3	chr15:55496447..55499435-chr15:55582041..55583888,2	K562	blood:
4	chr15:55609486..55611262-chr15:55788891..55791859,2	K562	blood:
5	chr15:55603830..55605770-chr15:55609490..55611756,2	K562	blood:
6	chr15:55485173..55489207-chr15:55609824..55611374,3	K562	blood:
7	chr15:55580259..55584808-chr15:55609765..55612829,5	K562	blood:
8	chr15:55529177..55531366-chr15:55559639..55562184,2	K562	blood:
9	chr15:55576187..55578993-chr15:55609821..55611472,2	MCF-7	breast:
10	chr15:55563187..55564952-chr15:55575957..55578942,3	K562	blood:
11	chr15:55574462..55576486-chr15:55577587..55580310,2	MCF-7	breast:
12	chr11:62606684..62607613-chr15:55611967..55612640,2	Hela-S3	cervix:
13	chr15:55603075..55606737-chr15:55608519..55611756,5	K562	blood:
14	chr15:55560645..55562501-chr15:55564581..55567204,2	K562	blood:
15	chr15:55582466..55583979-chr15:55708271..55711070,2	K562	blood:
16	chr15:55607488..55610247-chr15:55633602..55635929,2	K562	blood:
17	chr15:55607682..55613892-chr15:55697623..55703247,7	K562	blood:
18	chr15:55528399..55531795-chr15:55570084..55572608,4	K562	blood:
19	chr15:55559026..55561608-chr15:55564139..55565881,2	K562	blood:
20	chr15:55582048..55582594-chr19:40949979..40950516,2	Hela-S3	cervix:
21	chr15:55509049..55510463-chr15:55582084..55583305,19	MCF-7	breast:
22	chr15:55538847..55540639-chr15:55576116..55578035,2	MCF-7	breast:
23	chr15:55509415..55510514-chr15:55582030..55583628,14	K562	blood:
24	chr15:55611231..55613781-chr15:55650210..55652100,2	MCF-7	breast:
25	chr15:55575274..55577450-chr15:55698113..55700653,2	K562	blood:
26	chr15:55527813..55534361-chr15:55567580..55576356,11	K562	blood:
27	chr15:55566058..55568743-chr15:55575298..55578143,3	K562	blood:
28	chr1:45097061..45098036-chr15:55611574..55612452,2	NB4	blood:
29	chr15:55577997..55580916-chr15:55603109..55605324,2	MCF-7	breast:
30	chr15:55609877..55611698-chr15:55698360..55701817,3	MCF-7	breast:
31	chr15:55556814..55559793-chr15:55572719..55574257,2	K562	blood:
32	chr15:55559026..55561608-chr15:55564139..55565881,2	K562	blood:
33	chr15:55531824..55533387-chr15:55558858..55561281,2	K562	blood:
34	chr15:55484699..55490442-chr15:55579270..55584640,8	K562	blood:
35	chr15:55520021..55524159-chr15:55571941..55574919,3	K562	blood:
36	chr15:55577997..55580916-chr15:55603109..55605324,2	MCF-7	breast:
37	chr15:55531824..55534011-chr15:55559781..55562269,2	K562	blood:
38	chr15:55580643..55583951-chr15:55698978..55701737,3	K562	blood:
39	chr15:55557767..55561627-chr15:55569250..55572425,4	K562	blood:
40	chr15:55561094..55566521-chr15:55568415..55573489,7	K562	blood:
41	chr15:55563023..55565322-chr15:55568988..55571105,2	K562	blood:
42	chr15:55488197..55490619-chr15:55563570..55565134,3	K562	blood:
43	chr15:55572666..55574858-chr15:55699937..55702712,2	K562	blood:
44	chr15:55580735..55582255-chr15:55582320..55584429,2	MCF-7	breast:
45	chr15:55530995..55533093-chr15:55578497..55580439,2	K562	blood:
46	chr15:55557840..55559411-chr15:55561178..55563204,2	K562	blood:
47	chr15:55610027..55612992-chr15:55688713..55692198,3	K562	blood:
48	chr15:55574462..55576486-chr15:55577587..55580310,2	MCF-7	breast:
49	chr15:55610806..55611563-chr6:18264351..18265271,2	Hela-S3	cervix:
50	chr15:55579894..55582757-chr15:55689915..55691723,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-178D12.1.1-4	chr15:55611430-55611611	NONHSAT043990
2	lnc-RP11-178D12.1.1-4	chr15:55611832-55612228	NONHSAT043990
3	lnc-CCPG1-1	chr15:55609902-55610065	ENSG00000225973.3
4	lnc-RSL24D1-2	chr15:55562363-55562482	NONHSAT043984
5	lnc-CCPG1-1	chr15:55582086-55582594	NONHSAT043986
6	lnc-RSL24D1-2	chr15:55581914-55581989	NONHSAT043985
7	lnc-CCPG1-1	chr15:55611129-55611308	NONHSAT043986
8	lnc-RSL24D1-2	chr15:55561992-55562482	NONHSAT043985
9	lnc-CCPG1-1	chr15:55606218-55606358	NONHSAT043986
10	lnc-RSL24D1-2	chr15:55581914-55582011	NONHSAT043984
11	lnc-CCPG1-1	chr15:55611099-55611305	ENSG00000225973.3

No data

Variant related genes	Relation type
ENSG00000225973	TF binding region
PIGB	TF binding region
RAB27A	TF binding region
ENSG00000225973	CpG island
PIGB	CpG island
RAB27A	CpG island
ENSG00000137876	chromatin interactions
ENSG00000270103	chromatin interactions
ENSG00000261771	chromatin interactions
ENSG00000256061	chromatin interactions
ENSG00000124795	chromatin interactions
ENSG00000181789	chromatin interactions
ENSG00000138279	chromatin interactions
ENSG00000069943	chromatin interactions
ENSG00000225973	chromatin interactions
ENSG00000069974	chromatin interactions
ENSG00000261652	chromatin interactions
ENSG00000167565	chromatin interactions
ENSG00000260916	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000187147	chromatin interactions
ENSG00000128989	chromatin interactions

Extended variants
information (count: 2240 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:2240 , 50 per page) page: 1 2 3 4 5 6 7 ... 45

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12050885	chr15:55558624-55558625	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs528748135	chr15:55558628-55558629	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs545387908	chr15:55558642-55558643	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs565445875	chr15:55558683-55558684	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs548517860	chr15:55558726-55558727	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs79917770	chr15:55558732-55558733	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs150799591	chr15:55558740-55558741	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs561033621	chr15:55558798-55558799	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs530179064	chr15:55558811-55558812	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs182968480	chr15:55558876-55558877	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs139233374	chr15:55558877-55558878	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs8182068	chr15:55558908-55558909	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs571593289	chr15:55558975-55558976	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs549812025	chr15:55559001-55559002	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs142756653	chr15:55559015-55559016	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs201632705	chr15:55559020-55559021	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs547654494	chr15:55559028-55559029	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs567367313	chr15:55559045-55559046	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs541360887	chr15:55559085-55559086	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs538761210	chr15:55559100-55559101	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs75262242	chr15:55559132-55559133	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs186222585	chr15:55559145-55559146	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs146075210	chr15:55559146-55559147	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs539293965	chr15:55559181-55559182	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs558967727	chr15:55559199-55559200	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs140064130	chr15:55559238-55559239	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs78004450	chr15:55559269-55559270	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs541221430	chr15:55559271-55559272	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs561147356	chr15:55559272-55559273	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs11071174	chr15:55559289-55559290	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs191566898	chr15:55559290-55559291	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs563671376	chr15:55559325-55559326	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs145794327	chr15:55559336-55559337	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs552575947	chr15:55559391-55559392	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs79808300	chr15:55559430-55559431	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562681997	chr15:55559433-55559434	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527633939	chr15:55559438-55559439	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547569119	chr15:55559447-55559448	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148565621	chr15:55559471-55559472	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529763741	chr15:55559475-55559476	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs142950560	chr15:55559476-55559477	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs559710977	chr15:55559550-55559551	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs559762407	chr15:55559561-55559562	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553636856	chr15:55559562-55559563	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs59697709	chr15:55559582-55559583	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs151118834	chr15:55559618-55559619	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs182491627	chr15:55559624-55559625	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs554916101	chr15:55559638-55559639	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188056368	chr15:55559653-55559654	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs565983786	chr15:55559700-55559701	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:2092 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55490000-55562800	Weak transcription	Ovary	ovary
2	chr15:55514800-55560400	Weak transcription	Spleen	Spleen
3	chr15:55516000-55559600	Weak transcription	Fetal Stomach	stomach
4	chr15:55520800-55574800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:55540600-55561200	Weak transcription	Esophagus	oesophagus
6	chr15:55542400-55581000	Weak transcription	Fetal Intestine Small	intestine
7	chr15:55543600-55559200	Weak transcription	Hela-S3	cervix
8	chr15:55543800-55559400	Weak transcription	Thymus	Thymus
9	chr15:55544400-55558800	Weak transcription	Right Ventricle	heart
10	chr15:55545200-55561000	Weak transcription	Lung	lung
11	chr15:55546200-55559200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:55546200-55559800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:55546200-55559800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:55547600-55559400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:55547800-55559400	Weak transcription	Osteobl	bone
16	chr15:55547800-55559600	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:55547800-55571400	Weak transcription	Aorta	Aorta
18	chr15:55548000-55558800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:55548000-55558800	Weak transcription	Fetal Lung	lung
20	chr15:55548000-55559400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:55548400-55560200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:55548600-55558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:55548600-55559000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:55548600-55559200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:55548600-55574800	Weak transcription	Left Ventricle	heart
26	chr15:55549000-55558800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:55549000-55559000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:55549200-55559200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:55549200-55559600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:55549200-55559600	Weak transcription	NHLF	lung
31	chr15:55549200-55571600	Weak transcription	HMEC	breast
32	chr15:55549400-55559600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:55549600-55559200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:55549600-55559600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:55549800-55558800	Weak transcription	Primary T cells from cord blood	blood
36	chr15:55549800-55558800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:55550000-55559400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:55550000-55559400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:55550000-55571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:55551000-55559200	Weak transcription	GM12878-XiMat	blood
41	chr15:55551000-55561200	Weak transcription	Fetal Kidney	kidney
42	chr15:55553000-55559600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:55553200-55581000	Weak transcription	Fetal Intestine Large	intestine
44	chr15:55553400-55559000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:55554000-55558800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr15:55554200-55559000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:55555600-55559600	Weak transcription	Stomach Mucosa	stomach
48	chr15:55555600-55560000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:55556000-55559000	Strong transcription	K562	blood
50	chr15:55556600-55558800	Weak transcription	Primary hematopoietic stem cells	blood

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