Variant report

Variant	rs139233374
Chromosome Location	chr15:55558877-55558878
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55558293..55561051-chr15:55570591..55574257,3	K562	blood:
2	chr15:55531824..55533387-chr15:55558858..55561281,2	K562	blood:
3	chr15:55557840..55559411-chr15:55561178..55563204,2	K562	blood:
4	chr15:55557767..55561627-chr15:55569250..55572425,4	K562	blood:
5	chr15:55556814..55559793-chr15:55572719..55574257,2	K562	blood:

Variant related genes	Relation type
ENSG00000069974	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1036924	chr15:55527874-55616480	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv569522	chr15:55532211-55611126	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv904241	chr15:55534342-55611126	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv904242	chr15:55550755-55611126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv569524	chr15:55558624-55612511	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55490000-55562800	Weak transcription	Ovary	ovary
2	chr15:55514800-55560400	Weak transcription	Spleen	Spleen
3	chr15:55516000-55559600	Weak transcription	Fetal Stomach	stomach
4	chr15:55520800-55574800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:55540600-55561200	Weak transcription	Esophagus	oesophagus
6	chr15:55542400-55581000	Weak transcription	Fetal Intestine Small	intestine
7	chr15:55543600-55559200	Weak transcription	Hela-S3	cervix
8	chr15:55543800-55559400	Weak transcription	Thymus	Thymus
9	chr15:55545200-55561000	Weak transcription	Lung	lung
10	chr15:55546200-55559200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:55546200-55559800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:55546200-55559800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:55547600-55559400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:55547800-55559400	Weak transcription	Osteobl	bone
15	chr15:55547800-55559600	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:55547800-55571400	Weak transcription	Aorta	Aorta
17	chr15:55548000-55559400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:55548400-55560200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:55548600-55559000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:55548600-55559200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:55548600-55574800	Weak transcription	Left Ventricle	heart
22	chr15:55549000-55559000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:55549200-55559200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:55549200-55559600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:55549200-55559600	Weak transcription	NHLF	lung
26	chr15:55549200-55571600	Weak transcription	HMEC	breast
27	chr15:55549400-55559600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:55549600-55559200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:55549600-55559600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr15:55550000-55559400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:55550000-55559400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:55550000-55571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:55551000-55559200	Weak transcription	GM12878-XiMat	blood
34	chr15:55551000-55561200	Weak transcription	Fetal Kidney	kidney
35	chr15:55553000-55559600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:55553200-55581000	Weak transcription	Fetal Intestine Large	intestine
37	chr15:55553400-55559000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:55554200-55559000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr15:55555600-55559600	Weak transcription	Stomach Mucosa	stomach
40	chr15:55555600-55560000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:55556000-55559000	Strong transcription	K562	blood
42	chr15:55556800-55559000	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr15:55557000-55559000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr15:55557000-55559000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr15:55557600-55559400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr15:55557600-55561600	Strong transcription	Liver	Liver
47	chr15:55557800-55559200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:55558000-55559200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:55558000-55559800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:55558200-55559200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links