Variant report

Variant	nsv570050
Chromosome Location	chr15:76885977-76907376
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 761 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:761 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188875309	chr15:76886026-76886027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs181661884	chr15:76886044-76886045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376580445	chr15:76886064-76886065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530648347	chr15:76886072-76886073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs555826863	chr15:76886078-76886079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs115482815	chr15:76886099-76886100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538221049	chr15:76886133-76886134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs556621863	chr15:76886150-76886151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs578084776	chr15:76886157-76886158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs186305950	chr15:76886160-76886161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs369576255	chr15:76886174-76886175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs191546615	chr15:76886219-76886220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs180852567	chr15:76886226-76886227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs564069016	chr15:76886237-76886238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs561024843	chr15:76886246-76886247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62030417	chr15:76886324-76886325	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs186255204	chr15:76886325-76886326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189754503	chr15:76886333-76886334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs199660951	chr15:76886379-76886380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs1846437	chr15:76886386-76886387	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs183078721	chr15:76886389-76886390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565880586	chr15:76886394-76886395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368970639	chr15:76886502-76886503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548118274	chr15:76886613-76886614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs187842822	chr15:76886619-76886620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs537922661	chr15:76886712-76886713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190366719	chr15:76886774-76886775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs578040098	chr15:76886837-76886838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs372426626	chr15:76886881-76886882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs62030418	chr15:76886905-76886906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554499774	chr15:76886940-76886941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs183800225	chr15:76886963-76886964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543186824	chr15:76887028-76887029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs554837303	chr15:76887044-76887045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565791454	chr15:76887084-76887085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs56335303	chr15:76887122-76887123	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs564641361	chr15:76887167-76887168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187893630	chr15:76887192-76887193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554444745	chr15:76887244-76887245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540666087	chr15:76887264-76887265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574159551	chr15:76887325-76887326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs35139587	chr15:76887353-76887354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369927540	chr15:76887365-76887366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559580921	chr15:76887410-76887411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112534736	chr15:76887530-76887531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs193002765	chr15:76887545-76887546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs569715411	chr15:76887670-76887671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs536570174	chr15:76887746-76887747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs546221965	chr15:76887764-76887765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550248903	chr15:76887987-76887988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76882000-76887800	Weak transcription	Lung	lung
2	chr15:76882200-76991400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:76882400-76887800	Weak transcription	Primary B cells from cord blood	blood
4	chr15:76882400-76887800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:76882600-76886400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:76885800-76886000	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr15:76896800-76915600	Weak transcription	Primary B cells from cord blood	blood
8	chr15:76898000-76902600	Weak transcription	Ovary	ovary
9	chr15:76898200-76909600	Weak transcription	Left Ventricle	heart
10	chr15:76898400-76981000	Weak transcription	Pancreas	Pancrea
11	chr15:76899800-76904400	Weak transcription	Lung	lung
12	chr15:76900800-76901200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:76900800-76902000	ZNF genes & repeats	Fetal Muscle Leg	muscle
14	chr15:76900800-76902600	ZNF genes & repeats	Fetal Intestine Large	intestine
15	chr15:76900800-76902600	ZNF genes & repeats	Fetal Stomach	stomach
16	chr15:76901000-76901800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:76901000-76902400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:76901000-76902400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:76901000-76902600	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr15:76901000-76917200	Weak transcription	Gastric	stomach
21	chr15:76901200-76902400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:76901400-76901600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:76901400-76902800	ZNF genes & repeats	Dnd41	blood
24	chr15:76901400-76902800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr15:76902000-76903400	Weak transcription	Primary T cells from cord blood	blood
26	chr15:76902200-76902800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr15:76902200-76903600	Weak transcription	Brain Anterior Caudate	brain
28	chr15:76902600-76907400	Weak transcription	Fetal Stomach	stomach
29	chr15:76902600-76992000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:76902800-76915600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:76902800-76926400	Weak transcription	Dnd41	blood
32	chr15:76903400-76904000	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr15:76903400-76914800	Weak transcription	Small Intestine	intestine
34	chr15:76903400-76940400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:76903600-76914000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:76904000-76905000	ZNF genes & repeats	Liver	Liver
37	chr15:76904000-76908200	Weak transcription	Primary T cells from cord blood	blood
38	chr15:76904000-76927800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:76904400-76905000	ZNF genes & repeats	Lung	lung
40	chr15:76904400-76905000	ZNF genes & repeats	Ovary	ovary
41	chr15:76904400-76910400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:76904400-76923600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:76904600-76904800	ZNF genes & repeats	Aorta	Aorta
44	chr15:76904800-76905800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr15:76904800-76939800	Weak transcription	Aorta	Aorta
46	chr15:76905000-76907600	Weak transcription	Lung	lung
47	chr15:76905000-76941000	Weak transcription	Ovary	ovary
48	chr15:76905200-76908200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:76905400-76908600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:76905600-76905800	ZNF genes & repeats	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links