Variant report

Variant	nsv570243
Chromosome Location	chr15:82454283-82573255
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1538)
CpG islands
(count:794)
Chromatin interactive
region (count:57)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1538 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:82559315-82559851	K562	blood:	n/a	chr15:82559334-82559350
2	ARID3A	chr15:82524162-82524551	K562	blood:	n/a	n/a
3	ARID3A	chr15:82514032-82514105	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:82555714-82556193	HepG2	liver:	n/a	n/a
5	ARID3A	chr15:82555062-82555139	K562	blood:	n/a	n/a
6	ARID3A	chr15:82490380-82490623	HepG2	liver:	n/a	n/a
7	ARID3A	chr15:82464972-82465172	K562	blood:	n/a	n/a
8	ARID3A	chr15:82554834-82555131	HepG2	liver:	n/a	n/a
9	ATF1	chr15:82523950-82524615	K562	blood:	n/a	n/a
10	ATF1	chr15:82559461-82559850	K562	blood:	n/a	n/a
11	ATF1	chr15:82554221-82554539	K562	blood:	n/a	n/a
12	ATF1	chr15:82554940-82555263	K562	blood:	n/a	n/a
13	ATF1	chr15:82478772-82478809	K562	blood:	n/a	n/a
14	ATF1	chr15:82531947-82532068	K562	blood:	n/a	n/a
15	ATF1	chr15:82502554-82502603	K562	blood:	n/a	n/a
16	ATF2	chr15:82554787-82555221	GM12878	blood:	n/a	n/a
17	ATF3	chr15:82554649-82555249	A549	lung:	n/a	n/a
18	BATF	chr15:82475651-82475880	GM12878	blood:	n/a	n/a
19	BATF	chr15:82554283-82554528	GM12878	blood:	n/a	n/a
20	BATF	chr15:82479416-82479667	GM12878	blood:	n/a	n/a
21	BATF	chr15:82535965-82536263	GM12878	blood:	n/a	n/a
22	BATF	chr15:82536053-82536235	GM12878	blood:	n/a	n/a
23	BCL3	chr15:82554620-82555192	A549	lung:	n/a	chr15:82555168-82555176
24	BCLAF1	chr15:82554710-82555318	GM12878	blood:	n/a	chr15:82555168-82555176
25	BHLHE40	chr15:82554476-82555224	HepG2	liver:	n/a	chr15:82554950-82554966 chr15:82554640-82554649 chr15:82554639-82554648 chr15:82554640-82554649 chr15:82554634-82554655
26	BHLHE40	chr15:82554471-82555241	GM12878	blood:	n/a	chr15:82554950-82554966 chr15:82554640-82554649 chr15:82554639-82554648 chr15:82554640-82554649 chr15:82554634-82554655
27	BHLHE40	chr15:82524039-82524518	K562	blood:	n/a	n/a
28	BHLHE40	chr15:82554365-82555276	K562	blood:	n/a	chr15:82554950-82554966 chr15:82554640-82554649 chr15:82554639-82554648 chr15:82554640-82554649 chr15:82554634-82554655
29	BRCA1	chr15:82555006-82555196	HepG2	liver:	n/a	n/a
30	BRCA1	chr15:82554436-82554804	H1-hESC	embryonic stem cell:	n/a	n/a
31	BRCA1	chr15:82555010-82555075	GM12878	blood:	n/a	n/a
32	BRCA1	chr15:82554360-82555242	Hela-S3	cervix:	n/a	n/a
33	CBX3	chr15:82502457-82502885	K562	blood:	n/a	n/a
34	CBX3	chr15:82502495-82503014	HCT-116	colon:	n/a	n/a
35	CBX3	chr15:82524106-82524560	K562	blood:	n/a	n/a
36	CBX3	chr15:82554755-82555383	K562	blood:	n/a	n/a
37	CCNT2	chr15:82559609-82559822	K562	blood:	n/a	n/a
38	CCNT2	chr15:82554793-82555276	K562	blood:	n/a	chr15:82554850-82554859
39	CEBPB	chr15:82513893-82514222	Hela-S3	cervix:	n/a	chr15:82514049-82514060
40	CEBPB	chr15:82500471-82500724	Hela-S3	cervix:	n/a	chr15:82500605-82500616 chr15:82500605-82500618
41	CEBPB	chr15:82485900-82486114	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr15:82513887-82514202	HepG2	liver:	n/a	chr15:82514049-82514060
43	CEBPB	chr15:82503240-82503506	HepG2	liver:	n/a	chr15:82503333-82503344
44	CEBPB	chr15:82554022-82554526	IMR90	lung:	n/a	n/a
45	CEBPB	chr15:82524116-82524450	K562	blood:	n/a	n/a
46	CEBPB	chr15:82490414-82490646	H1-hESC	embryonic stem cell:	n/a	n/a
47	CEBPB	chr15:82556432-82556628	HepG2	liver:	n/a	chr15:82556467-82556478
48	CEBPB	chr15:82484838-82485107	IMR90	lung:	n/a	n/a
49	CEBPB	chr15:82513991-82514216	K562	blood:	n/a	chr15:82514049-82514060
50	CEBPB	chr15:82462873-82462971	K562	blood:	n/a	chr15:82462926-82462939

(count:794 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:82469848-82469898	NT2-D1	testis:	n/a
2	chr15:82469848-82469898	NT2-D1	testis:	n/a
3	chr15:82554584-82554634	CMK	blood:	n/a
4	chr15:82555336-82555386	BJ	skin:	n/a
5	chr15:82469848-82469898	IMR90	lung:	fetal
6	chr15:82558555-82558605	GM12878	blood:	n/a
7	chr15:82469848-82469898	HCPEpiC	choroid plexus:	n/a
8	chr15:82555336-82555386	NT2-D1	testis:	n/a
9	chr15:82469848-82469898	MCF-7	breast:	n/a
10	chr15:82554902-82554952	HCT-116	colon:	n/a
11	chr15:82555390-82555440	HEK293	kidney:	embryo
12	chr15:82555390-82555440	SAEC	small airway:	n/a
13	chr15:82551086-82551136	NHBE	bronchial:	n/a
14	chr15:82554820-82554870	HCF	heart:	n/a
15	chr15:82555336-82555386	PrEC	prostate:	n/a
16	chr15:82555113-82555163	IMR90	lung:	fetal
17	chr15:82558555-82558605	AG09309	skin:	n/a
18	chr15:82469848-82469898	A549	lung:	n/a
19	chr15:82554902-82554952	Jurkat	blood:	n/a
20	chr15:82554902-82554952	MCF10A-Er-Src	breast:	n/a
21	chr15:82553671-82553721	PrEC	prostate:	n/a
22	chr15:82553671-82553721	PFSK-1	brain:	n/a
23	chr15:82553671-82553721	SK-N-SH	brain:	n/a
24	chr15:82555336-82555386	Hela-S3	cervix:	n/a
25	chr15:82555552-82555602	Hepatocyte	liver:	n/a
26	chr15:82554902-82554952	T-47D	breast:	n/a
27	chr15:82554584-82554634	GM12878	blood:	n/a
28	chr15:82555336-82555386	ECC-1	luminal epithelium:	n/a
29	chr15:82554584-82554634	HEK293	kidney:	embryo
30	chr15:82469848-82469898	RPTEC	kidney:	n/a
31	chr15:82554584-82554634	HCF	heart:	n/a
32	chr15:82555390-82555440	U87	brain:	n/a
33	chr15:82554902-82554952	HL-60	blood:	n/a
34	chr15:82554886-82554936	CMK	blood:	n/a
35	chr15:82555113-82555163	SAEC	small airway:	n/a
36	chr15:82555336-82555386	GM06990	blood:	n/a
37	chr15:82554820-82554870	CMK	blood:	n/a
38	chr15:82554902-82554952	GM12891	blood:	n/a
39	chr15:82558555-82558605	HCT-116	colon:	n/a
40	chr15:82555456-82555506	HIPEpiC	eye:	n/a
41	chr15:82554584-82554634	HIPEpiC	eye:	n/a
42	chr15:82555113-82555163	HUVEC	blood vessel:	n/a
43	chr15:82555113-82555163	ECC-1	luminal epithelium:	n/a
44	chr15:82555552-82555602	AoSMC	blood vessel:	n/a
45	chr15:82555456-82555506	HRPEpiC	eye:	n/a
46	chr15:82555113-82555163	H1-hESC	embryonic stem cell:	embryo
47	chr15:82555113-82555163	NHBE	bronchial:	n/a
48	chr15:82555390-82555440	IMR90	lung:	fetal
49	chr15:82555113-82555163	Caco-2	colon:	n/a
50	chr15:82553671-82553721	HepG2	liver:	n/a

(count:57 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr15:82540150..82542827-chr15:82551322..82553905,2	K562	blood:
2	chr15:81607078..81609557-chr15:82470442..82472265,2	MCF-7	breast:
3	chr15:82524498..82526931-chr15:82528402..82530346,2	MCF-7	breast:
4	chr15:82470019..82471911-chr15:82482678..82484339,2	MCF-7	breast:
5	chr15:82556066..82557698-chr15:82564817..82567206,2	MCF-7	breast:
6	chr15:82469894..82470679-chr7:131711607..131712389,2	MCF-7	breast:
7	chr15:81702339..81702883-chr15:82490444..82491301,2	MCF-7	breast:
8	chr15:82469694..82471985-chr15:82489609..82491664,2	MCF-7	breast:
9	chr15:82546241..82548403-chr15:82550539..82552952,2	MCF-7	breast:
10	chr15:82337966..82340144-chr15:82550811..82553189,2	MCF-7	breast:
11	chr15:82456960..82458670-chr15:82467666..82470258,2	MCF-7	breast:
12	chr15:82400569..82401498-chr15:82490090..82491041,4	K562	blood:
13	chr15:82471168..82473775-chr15:82477385..82479321,2	K562	blood:
14	chr15:82445490..82448041-chr15:82456546..82458879,2	MCF-7	breast:
15	chr15:82554707..82555430-chr17:57915266..57915873,2	MCF-7	breast:
16	chr15:82557073..82558574-chr15:82565794..82567576,2	K562	blood:
17	chr15:82400526..82401456-chr15:82490044..82491282,10	MCF-7	breast:
18	chr15:82550051..82552780-chr15:82552889..82555231,4	K562	blood:
19	chr15:82463946..82466687-chr15:82468924..82471039,2	K562	blood:
20	chr15:82471168..82473775-chr15:82477385..82479321,2	K562	blood:
21	chr15:82557073..82558574-chr15:82565794..82567576,2	K562	blood:
22	chr15:82554331..82555047-chr17:39845080..39845674,3	Hela-S3	cervix:
23	chr15:82470019..82471911-chr15:82482678..82484339,2	MCF-7	breast:
24	chr15:82458770..82460757-chr15:82464173..82465930,2	K562	blood:
25	chr15:82472620..82475056-chr15:82476421..82478115,2	MCF-7	breast:
26	chr15:82556066..82557698-chr15:82564817..82567206,2	MCF-7	breast:
27	chr15:82546241..82548403-chr15:82550539..82552952,2	MCF-7	breast:
28	chr15:82495558..82497453-chr15:82498796..82500529,2	K562	blood:
29	chr15:82465181..82467213-chr15:82481479..82484313,2	MCF-7	breast:
30	chr15:82511968..82514595-chr15:82553137..82554662,2	K562	blood:
31	chr15:82460625..82462392-chr15:82463596..82466044,2	MCF-7	breast:
32	chr15:82544226..82545855-chr15:82550615..82553251,2	K562	blood:
33	chr15:82460625..82462392-chr15:82463596..82466044,2	MCF-7	breast:
34	chr15:82449628..82452365-chr15:82458960..82461423,2	MCF-7	breast:
35	chr15:82400510..82401451-chr15:82489931..82491014,9	MCF-7	breast:
36	chr15:82558957..82560704-chr15:82563268..82565317,2	K562	blood:
37	chr15:82468744..82470564-chr15:82476578..82478505,2	K562	blood:
38	chr15:82456960..82458670-chr15:82467666..82470258,2	MCF-7	breast:
39	chr15:82472620..82475056-chr15:82476421..82478115,2	MCF-7	breast:
40	chr15:82540150..82542827-chr15:82551322..82553905,2	K562	blood:
41	chr15:82550191..82552669-chr15:82553526..82555918,3	MCF-7	breast:
42	chr15:82514202..82516505-chr15:82518442..82521206,2	K562	blood:
43	chr15:82431847..82432366-chr15:82489996..82490856,2	MCF-7	breast:
44	chr15:82463946..82466687-chr15:82468924..82471039,2	K562	blood:
45	chr12:6862392..6862918-chr15:82554357..82555098,2	Hela-S3	cervix:
46	chr15:82458770..82460757-chr15:82464173..82465930,2	K562	blood:
47	chr15:82511968..82514595-chr15:82553137..82554662,2	K562	blood:
48	chr15:82514202..82516505-chr15:82518442..82521206,2	K562	blood:
49	chr15:82469694..82471985-chr15:82489609..82491664,2	MCF-7	breast:
50	chr15:82470198..82471048-chr17:7976834..7977429,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GOLGA6L9-6	chr15:82557014-82557230	NONHSAT047773
2	lnc-GOLGA6L9-6	chr15:82555485-82555529	NONHSAT047773

No data

Variant related genes	Relation type
FAM154B	TF binding region
RNU1-77P	TF binding region
EFTUD1	TF binding region
FAM154B	CpG island
RNU1-77P	CpG island
EFTUD1	CpG island
ENSG00000062716	chromatin interactions
ENSG00000089693	chromatin interactions
ENSG00000140598	chromatin interactions
ENSG00000183496	chromatin interactions
ENSG00000259372	chromatin interactions
ENSG00000212170	chromatin interactions
ENSG00000174371	chromatin interactions
ENSG00000188659	chromatin interactions
ENSG00000173812	chromatin interactions

Extended variants
information (count: 4087 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:4087 , 50 per page) page: 1 2 3 4 5 6 7 ... 82

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9972386	chr15:82454283-82454284	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs147215604	chr15:82454289-82454290	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566031632	chr15:82454310-82454311	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs536880785	chr15:82454376-82454377	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114505592	chr15:82454416-82454417	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs541119678	chr15:82454515-82454516	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs546474301	chr15:82454534-82454535	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs536271778	chr15:82454535-82454536	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs140538048	chr15:82454553-82454554	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs118183035	chr15:82454581-82454582	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs554582845	chr15:82454641-82454642	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568420447	chr15:82454691-82454692	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149719006	chr15:82454774-82454775	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs112585198	chr15:82454827-82454828	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs533314636	chr15:82454828-82454829	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs557243326	chr15:82454882-82454883	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs577381136	chr15:82454895-82454896	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs374389740	chr15:82454933-82454934	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551543691	chr15:82454942-82454943	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs36008271	chr15:82454944-82454945	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs548654368	chr15:82454945-82454946	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs570040671	chr15:82454974-82454975	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77116149	chr15:82455025-82455026	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs573623434	chr15:82455069-82455070	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs541809005	chr15:82455099-82455100	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs561728710	chr15:82455100-82455101	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs530496162	chr15:82455129-82455130	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs4566118	chr15:82455202-82455203	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs148730883	chr15:82455221-82455222	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs536757295	chr15:82455256-82455257	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs55738497	chr15:82455285-82455286	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs191939005	chr15:82455340-82455341	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533128392	chr15:82455369-82455370	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs2134047	chr15:82455421-82455422	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs566419098	chr15:82455425-82455426	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529159755	chr15:82455451-82455452	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77093843	chr15:82455478-82455479	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
38	rs7181655	chr15:82455616-82455617	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs79205791	chr15:82455620-82455621	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs117645815	chr15:82455649-82455650	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185130170	chr15:82455668-82455669	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs570882366	chr15:82455707-82455708	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540032311	chr15:82455711-82455712	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs570172280	chr15:82455713-82455714	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558944497	chr15:82455737-82455738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs573532269	chr15:82455743-82455744	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs7180584	chr15:82455834-82455835	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs142283291	chr15:82455853-82455854	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575162954	chr15:82455868-82455869	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs114196644	chr15:82455871-82455872	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Congenital diaphragmatic hernia	20921022	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
renal disease	17924346	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21509527	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:2565 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:82420400-82458400	Weak transcription	HepG2	liver
4	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
10	chr15:82432600-82454800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:82432600-82454800	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
13	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
16	chr15:82438400-82456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:82439400-82455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:82439800-82454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:82439800-82465600	Weak transcription	K562	blood
20	chr15:82440400-82455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
22	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
23	chr15:82442800-82454400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:82443000-82454800	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:82443400-82457000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:82444000-82455800	Weak transcription	Fetal Brain Female	brain
27	chr15:82444200-82454400	Weak transcription	Aorta	Aorta
28	chr15:82444200-82454400	Weak transcription	Spleen	Spleen
29	chr15:82444400-82454600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:82444400-82454800	Weak transcription	Brain Angular Gyrus	brain
31	chr15:82444400-82454800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:82444400-82455000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:82444400-82455000	Weak transcription	Right Ventricle	heart
34	chr15:82444400-82465200	Weak transcription	Brain Germinal Matrix	brain
35	chr15:82444600-82454400	Weak transcription	Fetal Muscle Leg	muscle
36	chr15:82444600-82454400	Weak transcription	Fetal Stomach	stomach
37	chr15:82444600-82454400	Weak transcription	Left Ventricle	heart
38	chr15:82444600-82454800	Weak transcription	Brain Anterior Caudate	brain
39	chr15:82444600-82454800	Weak transcription	Brain Substantia Nigra	brain
40	chr15:82444600-82454800	Weak transcription	Ovary	ovary
41	chr15:82444600-82455000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:82444600-82455000	Weak transcription	Placenta	Placenta
43	chr15:82444600-82455000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:82444600-82455200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:82444600-82456600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr15:82444600-82458000	Weak transcription	NHLF	lung
47	chr15:82444600-82495800	Weak transcription	Fetal Intestine Small	intestine
48	chr15:82444800-82454400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:82444800-82454400	Weak transcription	Fetal Thymus	thymus
50	chr15:82446400-82456400	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links