Variant report

Variant	rs149719006
Chromosome Location	chr15:82454774-82454775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:82454749-82454830	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
EFTUD1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:82420400-82458400	Weak transcription	HepG2	liver
4	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
10	chr15:82432600-82454800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:82432600-82454800	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
13	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
16	chr15:82438400-82456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:82439400-82455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:82439800-82454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:82439800-82465600	Weak transcription	K562	blood
20	chr15:82440400-82455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
22	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
23	chr15:82443000-82454800	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:82443400-82457000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:82444000-82455800	Weak transcription	Fetal Brain Female	brain
26	chr15:82444400-82454800	Weak transcription	Brain Angular Gyrus	brain
27	chr15:82444400-82454800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:82444400-82455000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:82444400-82455000	Weak transcription	Right Ventricle	heart
30	chr15:82444400-82465200	Weak transcription	Brain Germinal Matrix	brain
31	chr15:82444600-82454800	Weak transcription	Brain Anterior Caudate	brain
32	chr15:82444600-82454800	Weak transcription	Brain Substantia Nigra	brain
33	chr15:82444600-82454800	Weak transcription	Ovary	ovary
34	chr15:82444600-82455000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:82444600-82455000	Weak transcription	Placenta	Placenta
36	chr15:82444600-82455000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:82444600-82455200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:82444600-82456600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:82444600-82458000	Weak transcription	NHLF	lung
40	chr15:82444600-82495800	Weak transcription	Fetal Intestine Small	intestine
41	chr15:82446400-82456400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr15:82446600-82456400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:82446800-82456600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:82447600-82457000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:82447800-82456400	Strong transcription	Dnd41	blood
46	chr15:82448000-82456600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr15:82448200-82456600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:82448400-82455000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:82448800-82454800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:82449800-82455600	Strong transcription	Primary B cells from cord blood	blood

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