Variant report

Variant	nsv570451
Chromosome Location	chr15:92575841-92581290
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92578004..92579721-chr15:92585811..92587645,2	K562	blood:
2	chr15:92574683..92576781-chr15:92577494..92579219,2	MCF-7	breast:
3	chr15:92574683..92576781-chr15:92577494..92579219,2	MCF-7	breast:

Extended variants
information (count: 265 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:265 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs925874	chr15:92575841-92575842	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs182355662	chr15:92575842-92575843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs5814506	chr15:92575875-92575876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs530571792	chr15:92575880-92575881	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs544515451	chr15:92575881-92575882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs560990484	chr15:92575883-92575884	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs529984736	chr15:92575888-92575889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs73536124	chr15:92575904-92575905	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs146414021	chr15:92575927-92575928	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs552658184	chr15:92575934-92575935	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569497452	chr15:92575935-92575936	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs12899498	chr15:92575942-92575943	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs548750306	chr15:92575946-92575947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs187027455	chr15:92576002-92576003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs12441614	chr15:92576054-92576055	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs192719455	chr15:92576071-92576072	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs552587311	chr15:92576075-92576076	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs140660487	chr15:92576101-92576102	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs114654320	chr15:92576134-92576135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs538347326	chr15:92576155-92576156	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs73536128	chr15:92576156-92576157	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs375184455	chr15:92576158-92576159	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs149007309	chr15:92576163-92576164	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs531244092	chr15:92576166-92576167	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs142953168	chr15:92576168-92576169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533817107	chr15:92576180-92576181	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs540492851	chr15:92576216-92576217	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs74657739	chr15:92576261-92576262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs185285977	chr15:92576270-92576271	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs190152340	chr15:92576290-92576291	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs549400337	chr15:92576363-92576364	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs567893607	chr15:92576366-92576367	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs193238740	chr15:92576367-92576368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552721627	chr15:92576370-92576371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs184805243	chr15:92576371-92576372	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs35779633	chr15:92576384-92576385	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs369503046	chr15:92576391-92576392	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs12437726	chr15:92576430-92576431	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs79823636	chr15:92576435-92576436	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs568626918	chr15:92576441-92576442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs547152814	chr15:92576442-92576443	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs375346733	chr15:92576484-92576485	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs370778596	chr15:92576520-92576521	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs540395671	chr15:92576526-92576527	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs566151328	chr15:92576548-92576549	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs189415767	chr15:92576552-92576553	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs141044159	chr15:92576562-92576563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs558113832	chr15:92576574-92576575	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs369035971	chr15:92576576-92576577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs575271861	chr15:92576584-92576585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:153 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
4	chr15:92570600-92578000	Enhancers	Right Atrium	heart
5	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
7	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
8	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:92572800-92576600	Weak transcription	Fetal Brain Male	brain
10	chr15:92573000-92577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:92573200-92577800	Enhancers	Brain Substantia Nigra	brain
13	chr15:92573600-92576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:92573800-92576600	Weak transcription	Fetal Lung	lung
15	chr15:92573800-92579400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:92574000-92576600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:92574000-92576600	Weak transcription	Ovary	ovary
18	chr15:92574200-92576400	Weak transcription	Adipose Nuclei	Adipose
19	chr15:92574200-92580600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:92574600-92576000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:92574600-92579400	Enhancers	Left Ventricle	heart
23	chr15:92574800-92580600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
25	chr15:92575000-92576000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:92575000-92576400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:92575000-92576800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:92575000-92580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:92575000-92580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:92575000-92580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:92575200-92578000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr15:92575200-92578200	Enhancers	Right Ventricle	heart
33	chr15:92575400-92576600	Weak transcription	Esophagus	oesophagus
34	chr15:92575400-92577000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr15:92575400-92580400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:92575400-92580800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:92575600-92576400	Weak transcription	Fetal Heart	heart
38	chr15:92575600-92576600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:92575600-92576600	Weak transcription	Lung	lung
40	chr15:92575600-92576800	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:92575600-92584000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:92575800-92576000	Enhancers	Spleen	Spleen
43	chr15:92575800-92577000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr15:92575800-92577400	Enhancers	Brain Angular Gyrus	brain
45	chr15:92575800-92584400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:92576000-92576400	Weak transcription	Spleen	Spleen
47	chr15:92576000-92583800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:92576200-92576600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:92576200-92577000	Enhancers	Primary hematopoietic stem cells	blood
50	chr15:92576400-92576600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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