Variant report

Variant	rs149007309
Chromosome Location	chr15:92576163-92576164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92574683..92576781-chr15:92577494..92579219,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv570450	chr15:92575841-92578579	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv570451	chr15:92575841-92581290	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
4	chr15:92570600-92578000	Enhancers	Right Atrium	heart
5	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
7	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
8	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:92572800-92576600	Weak transcription	Fetal Brain Male	brain
10	chr15:92573000-92577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:92573200-92577800	Enhancers	Brain Substantia Nigra	brain
13	chr15:92573600-92576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:92573800-92576600	Weak transcription	Fetal Lung	lung
15	chr15:92573800-92579400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:92574000-92576600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:92574000-92576600	Weak transcription	Ovary	ovary
18	chr15:92574200-92576400	Weak transcription	Adipose Nuclei	Adipose
19	chr15:92574200-92580600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:92574600-92579400	Enhancers	Left Ventricle	heart
22	chr15:92574800-92580600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
24	chr15:92575000-92576400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:92575000-92576800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:92575000-92580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:92575000-92580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:92575000-92580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:92575200-92578000	Enhancers	Primary T cells fromperipheralblood	blood
30	chr15:92575200-92578200	Enhancers	Right Ventricle	heart
31	chr15:92575400-92576600	Weak transcription	Esophagus	oesophagus
32	chr15:92575400-92577000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr15:92575400-92580400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:92575400-92580800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:92575600-92576400	Weak transcription	Fetal Heart	heart
36	chr15:92575600-92576600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:92575600-92576600	Weak transcription	Lung	lung
38	chr15:92575600-92576800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr15:92575600-92584000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:92575800-92577000	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr15:92575800-92577400	Enhancers	Brain Angular Gyrus	brain
42	chr15:92575800-92584400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:92576000-92576400	Weak transcription	Spleen	Spleen
44	chr15:92576000-92583800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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