Variant report

Variant	nsv579465
Chromosome Location	chr19:37868552-37917692
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:37867252..37869425-chr19:37869859..37871564,2	MCF-7	breast:
2	chr19:37855409..37858293-chr19:37876540..37879521,2	MCF-7	breast:
3	chr19:37867252..37869425-chr19:37869859..37871564,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF527-3	chr19:37893254-37893658	NONHSAT066110
2	lnc-ZNF527-2	chr19:37870389-37870594	NONHSAT066108
3	lnc-ZNF569-3	chr19:37869794-37870014	l_1679_chr19:37869793-37874605_adrenal
4	lnc-ZNF569-3	chr19:37874109-37874614	l_1679_chr19:37869793-37874605_adrenal
5	lnc-ZNF527-2	chr19:37870022-37870148	NONHSAT066108
6	lnc-ZNF569-1	chr19:37917241-37917280	NONHSAT066111
7	lnc-ZNF527-3	chr19:37894123-37894480	NONHSAT066110
8	lnc-ZNF569-2	chr19:37892306-37894748	NONHSAT066109

No data

Extended variants
information (count: 1640 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:1640 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16979502	chr19:37868552-37868553	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs368603586	chr19:37868666-37868667	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535901795	chr19:37868676-37868677	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs554526040	chr19:37868695-37868696	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs527645146	chr19:37868700-37868701	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs566449391	chr19:37868718-37868719	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373163045	chr19:37868725-37868726	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549701224	chr19:37868736-37868737	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73930980	chr19:37868746-37868747	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs145640767	chr19:37868751-37868752	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550328897	chr19:37868755-37868756	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571722475	chr19:37868776-37868777	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs539162653	chr19:37868791-37868792	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs557391476	chr19:37868832-37868833	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs566136924	chr19:37868850-37868851	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377701208	chr19:37868863-37868864	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs533544119	chr19:37868869-37868870	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs555417144	chr19:37868887-37868888	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571641846	chr19:37868936-37868937	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111409931	chr19:37868937-37868938	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs74828655	chr19:37868948-37868949	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs76301838	chr19:37868950-37868951	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533799398	chr19:37869022-37869023	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs144391475	chr19:37869031-37869032	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573866631	chr19:37869055-37869056	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs544101734	chr19:37869071-37869072	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556343612	chr19:37869106-37869107	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs577875849	chr19:37869118-37869119	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs138256815	chr19:37869149-37869150	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560524441	chr19:37869209-37869210	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187814560	chr19:37869222-37869223	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs190825434	chr19:37869288-37869289	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs140933541	chr19:37869375-37869376	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs561456781	chr19:37869408-37869409	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs558342583	chr19:37869425-37869426	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532053775	chr19:37869443-37869444	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182290771	chr19:37869460-37869461	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150226535	chr19:37869533-37869534	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs74620908	chr19:37869534-37869535	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs187851666	chr19:37869610-37869611	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs77281698	chr19:37869658-37869659	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs112806681	chr19:37869677-37869678	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs533579954	chr19:37869678-37869679	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192787080	chr19:37869693-37869694	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs556425721	chr19:37869746-37869747	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs567120162	chr19:37869763-37869764	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs555363909	chr19:37869824-37869825	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs538156967	chr19:37869848-37869849	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs149301131	chr19:37869872-37869873	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs183307436	chr19:37869875-37869876	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1098 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37862600-37871000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:37862800-37870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr19:37862800-37871000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr19:37863200-37872000	Weak transcription	Fetal Heart	heart
5	chr19:37863400-37872000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr19:37863800-37868800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr19:37863800-37873200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:37864000-37869000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:37864000-37869400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:37864000-37882000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:37864000-37882000	ZNF genes & repeats	Liver	Liver
12	chr19:37864400-37869000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
13	chr19:37864400-37869200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:37864400-37880600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:37864400-37880800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr19:37864600-37868800	ZNF genes & repeats	Ovary	ovary
17	chr19:37864600-37869200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr19:37864600-37873400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr19:37864600-37880600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr19:37864600-37890600	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr19:37864800-37870800	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr19:37864800-37870800	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr19:37865000-37868800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr19:37865000-37870800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr19:37865000-37871000	Strong transcription	Brain Anterior Caudate	brain
26	chr19:37865000-37875400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr19:37865000-37880600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr19:37865200-37868600	Strong transcription	Osteobl	bone
29	chr19:37865200-37869000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:37865200-37870000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr19:37865200-37870400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr19:37865200-37874200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:37865200-37874600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr19:37865400-37868800	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr19:37865400-37880600	ZNF genes & repeats	Primary T cells from cord blood	blood
36	chr19:37865800-37869200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
37	chr19:37865800-37875800	Strong transcription	Fetal Muscle Trunk	muscle
38	chr19:37866000-37869800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr19:37866000-37870800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr19:37866000-37874200	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr19:37866200-37870800	Weak transcription	NHDF-Ad	bronchial
42	chr19:37866600-37869400	ZNF genes & repeats	Fetal Stomach	stomach
43	chr19:37866600-37871000	Strong transcription	Left Ventricle	heart
44	chr19:37866800-37870800	Weak transcription	HUVEC	blood vessel
45	chr19:37867000-37868600	Strong transcription	Brain Hippocampus Middle	brain
46	chr19:37867000-37868600	Weak transcription	Fetal Thymus	thymus
47	chr19:37867000-37869400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr19:37867000-37869400	Weak transcription	Psoas Muscle	Psoas
49	chr19:37867000-37869800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr19:37867000-37869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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