Variant report

Variant	rs561456781
Chromosome Location	chr19:37869408-37869409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37867252..37869425-chr19:37869859..37871564,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579464	chr19:37858660-37881556	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37862600-37871000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:37862800-37870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr19:37862800-37871000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr19:37863200-37872000	Weak transcription	Fetal Heart	heart
5	chr19:37863400-37872000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr19:37863800-37873200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr19:37864000-37882000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:37864000-37882000	ZNF genes & repeats	Liver	Liver
9	chr19:37864400-37880600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:37864400-37880800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:37864600-37873400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr19:37864600-37880600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
13	chr19:37864600-37890600	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:37864800-37870800	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr19:37864800-37870800	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr19:37865000-37870800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr19:37865000-37871000	Strong transcription	Brain Anterior Caudate	brain
18	chr19:37865000-37875400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:37865000-37880600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr19:37865200-37870000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:37865200-37870400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr19:37865200-37874200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:37865200-37874600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr19:37865400-37880600	ZNF genes & repeats	Primary T cells from cord blood	blood
25	chr19:37865800-37875800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr19:37866000-37869800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr19:37866000-37870800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr19:37866000-37874200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr19:37866200-37870800	Weak transcription	NHDF-Ad	bronchial
30	chr19:37866600-37871000	Strong transcription	Left Ventricle	heart
31	chr19:37866800-37870800	Weak transcription	HUVEC	blood vessel
32	chr19:37867000-37869800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr19:37867000-37869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:37867000-37870400	Weak transcription	NH-A	brain
35	chr19:37867000-37870600	Weak transcription	Right Ventricle	heart
36	chr19:37867000-37870800	Weak transcription	Stomach Mucosa	stomach
37	chr19:37867000-37870800	Weak transcription	HSMM	muscle
38	chr19:37867000-37871000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr19:37867000-37871000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr19:37867000-37871200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr19:37867000-37878600	Weak transcription	Hela-S3	cervix
42	chr19:37867200-37869600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr19:37867200-37869800	Weak transcription	Colonic Mucosa	Colon
44	chr19:37867200-37870600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr19:37867200-37870600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:37867200-37870800	Strong transcription	Fetal Intestine Large	intestine
47	chr19:37867200-37870800	Weak transcription	NHLF	lung
48	chr19:37867400-37869600	Weak transcription	Placenta	Placenta
49	chr19:37867400-37870200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr19:37867600-37870600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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