Variant report

Variant	nsv5883
Chromosome Location	chr7:102807447-102814693
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102788301..102790522-chr7:102804564..102807525,2	K562	blood:

Variant related genes	Relation type
ENSG00000161048	chromatin interactions

Extended variants
information (count: 254 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:254 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149138509	chr7:102807488-102807489	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs1968200	chr7:102807549-102807550	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs34589053	chr7:102807573-102807574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs568961376	chr7:102807644-102807645	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs10278198	chr7:102807653-102807654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs552650700	chr7:102807686-102807687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs76284802	chr7:102807687-102807688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs77438725	chr7:102807688-102807689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs183611966	chr7:102807701-102807702	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs574355887	chr7:102807712-102807713	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs535381910	chr7:102807758-102807759	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs556489387	chr7:102807779-102807780	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs540120984	chr7:102807780-102807781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs545520364	chr7:102807803-102807804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs62484781	chr7:102807820-102807821	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs572882462	chr7:102807895-102807896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs187510786	chr7:102807919-102807920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs560007732	chr7:102807955-102807956	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs62484782	chr7:102807963-102807964	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs548902966	chr7:102808018-102808019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs34180340	chr7:102808069-102808070	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs148296509	chr7:102808136-102808137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs530926373	chr7:102808137-102808138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs9641307	chr7:102808192-102808193	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs199500107	chr7:102808199-102808200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs191966719	chr7:102808202-102808203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150476792	chr7:102808236-102808237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs138491976	chr7:102808258-102808259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567917570	chr7:102808282-102808283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs9641308	chr7:102808283-102808284	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs184953325	chr7:102808301-102808302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530869489	chr7:102808307-102808308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs542737416	chr7:102808316-102808317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs189329059	chr7:102808350-102808351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373194335	chr7:102808358-102808359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9640672	chr7:102808362-102808363	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs539977828	chr7:102808420-102808421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561095652	chr7:102808510-102808511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs10282151	chr7:102808516-102808517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs62484783	chr7:102808530-102808531	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs2411084	chr7:102808571-102808572	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs111858263	chr7:102808576-102808577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376098306	chr7:102808577-102808578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542483374	chr7:102808579-102808580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs139607969	chr7:102808610-102808611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs367626418	chr7:102808615-102808616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531142923	chr7:102808624-102808625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs372279755	chr7:102808665-102808666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192404885	chr7:102808733-102808734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149481526	chr7:102808833-102808834	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Prostate cancer	18632612	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	19907438	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
Pancreatic cancer	17952125	CNVD
Glioblastoma multiforme	21510904	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102806600-102808200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:102807400-102807800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:102807400-102807800	Enhancers	Adipose Nuclei	Adipose
4	chr7:102808200-102812200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:102808800-102809200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:102812000-102812600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:102812200-102812600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:102812200-102812600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:102812200-102813600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:102812400-102813000	Enhancers	Fetal Brain Male	brain
11	chr7:102812600-102813000	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:102813800-102814200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links