Variant report

Variant	rs2411084
Chromosome Location	chr7:102808571-102808572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10224485	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224625	0.87[AMR][1000 genomes]
rs10233912	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271536	1.00[AMR][1000 genomes]
rs10276193	1.00[AMR][1000 genomes]
rs10278727	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281607	1.00[AMR][1000 genomes]
rs10486852	1.00[AMR][1000 genomes]
rs10808121	1.00[AMR][1000 genomes]
rs1524419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136740	1.00[AMR][1000 genomes]
rs28439727	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28881872	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3987943	1.00[AMR][1000 genomes]
rs4576360	1.00[AMR][1000 genomes]
rs4999173	1.00[AMR][1000 genomes]
rs6465888	0.87[AMR][1000 genomes]
rs6976639	0.85[AFR][1000 genomes]
rs7341515	1.00[AMR][1000 genomes]
rs7357142	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805950	1.00[AMR][1000 genomes]
rs7809075	1.00[AMR][1000 genomes]
rs9886322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv970922	chr7:102805358-102810814	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv5883	chr7:102807447-102814693	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102808200-102812200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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