Variant report

Variant	rs10486852
Chromosome Location	chr7:102992221-102992222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102989850..102992872-chr7:102995534..102998774,5	K562	blood:
2	chr7:102991625..102994191-chr7:102997426..102999083,2	K562	blood:
3	chr7:102991838..102993552-chr7:103006379..103009024,2	MCF-7	breast:
4	chr7:102983716..102986860-chr7:102990679..102992959,4	K562	blood:
5	chr20:47350163..47352126-chr7:102990689..102992821,2	MCF-7	breast:
6	chr7:102941619..102943706-chr7:102990642..102992263,2	K562	blood:
7	chr7:102986930..102989568-chr7:102989846..102992795,3	K562	blood:

Variant related genes	Relation type
ENSG00000161057	Chromatin interaction
ENSG00000235354	Chromatin interaction
ENSG00000105821	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224485	1.00[AMR][1000 genomes]
rs10224625	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10250825	1.00[MEX][hapmap]
rs10251394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270034	1.00[MEX][hapmap]
rs10271536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276193	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281607	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17136740	0.82[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142245	1.00[MEX][hapmap]
rs2411084	1.00[AMR][1000 genomes]
rs28439727	0.87[AMR][1000 genomes]
rs28881872	0.85[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906642	1.00[MEX][hapmap]
rs4478507	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs4999173	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs6465911	1.00[MEX][hapmap]
rs6976639	0.82[YRI][hapmap]
rs7357142	0.82[ASW][hapmap];0.89[LWK][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7811224	0.81[MKK][hapmap]
rs9886322	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102988600-103002400	Weak transcription	Spleen	Spleen
2	chr7:102989000-103006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:102989200-102992400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:102989200-102993200	Weak transcription	Aorta	Aorta
5	chr7:102989200-102994800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:102989200-102995800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:102989200-103002400	Weak transcription	Esophagus	oesophagus
8	chr7:102989200-103006200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:102989200-103007800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:102989200-103010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:102989200-103011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
13	chr7:102989400-102992400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:102989400-102993000	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:102989600-102992800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:102989600-102992800	Weak transcription	Fetal Intestine Small	intestine
17	chr7:102989600-102994800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:102989600-103000800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:102989600-103002400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:102989600-103002600	Weak transcription	Ovary	ovary
21	chr7:102989600-103007000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:102989800-102992400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr7:102989800-102992800	Weak transcription	Fetal Stomach	stomach
24	chr7:102989800-102993000	Weak transcription	Fetal Intestine Large	intestine
25	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
26	chr7:102990000-102992800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr7:102990000-102993000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:102990000-102993200	Weak transcription	HSMM	muscle
29	chr7:102990000-103000800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:102990200-102992600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:102990200-102993000	Weak transcription	Lung	lung
32	chr7:102990200-102994800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:102990200-102995000	Weak transcription	Colonic Mucosa	Colon
34	chr7:102990200-102995000	Weak transcription	Fetal Lung	lung
35	chr7:102990200-102995200	Weak transcription	Fetal Brain Male	brain
36	chr7:102990200-102995800	Weak transcription	Pancreas	Pancrea
37	chr7:102990200-102996000	Weak transcription	HSMMtube	muscle
38	chr7:102990200-103002400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:102990400-102993600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr7:102990400-102993800	Genic enhancers	Liver	Liver
41	chr7:102990400-102995200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:102990600-102992400	Weak transcription	NHDF-Ad	bronchial
43	chr7:102990600-102993200	Weak transcription	HUVEC	blood vessel
44	chr7:102990600-102996000	Weak transcription	Brain Substantia Nigra	brain
45	chr7:102990600-102996400	Weak transcription	Fetal Kidney	kidney
46	chr7:102990600-102998800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:102990600-103010600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:102990800-102992600	Genic enhancers	K562	blood
49	chr7:102990800-102992800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr7:102990800-102994600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links