Variant report

Variant	rs28881872
Chromosome Location	chr7:102870184-102870185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10224485	1.00[AMR][1000 genomes]
rs10224625	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10233912	1.00[AMR][1000 genomes]
rs10250825	0.88[LWK][hapmap];1.00[MEX][hapmap]
rs10251394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261182	1.00[AMR][1000 genomes]
rs10268849	1.00[MEX][hapmap]
rs10270034	1.00[MEX][hapmap]
rs10271536	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278727	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs10281607	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10486852	0.85[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10808121	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11560367	1.00[MEX][hapmap]
rs13242079	1.00[MEX][hapmap]
rs1404213	1.00[MEX][hapmap]
rs1477160	1.00[MEX][hapmap]
rs1524419	1.00[AMR][1000 genomes]
rs17136740	0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142245	1.00[MEX][hapmap]
rs1968199	1.00[MEX][hapmap]
rs2041949	1.00[MEX][hapmap]
rs2193418	1.00[MEX][hapmap]
rs2411084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439727	0.87[AMR][1000 genomes]
rs3181009	1.00[MEX][hapmap]
rs3987943	1.00[AMR][1000 genomes]
rs4478507	0.85[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.81[AFR][1000 genomes]
rs4576360	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4727561	1.00[MEX][hapmap]
rs4729872	1.00[MEX][hapmap]
rs4999173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465888	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs6465890	1.00[MEX][hapmap]
rs6465911	1.00[MEX][hapmap]
rs6950177	1.00[MEX][hapmap]
rs6973702	1.00[MEX][hapmap]
rs6976639	1.00[YRI][hapmap]
rs6977206	1.00[MEX][hapmap]
rs7341515	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs7357142	0.92[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783856	1.00[MEX][hapmap]
rs7784337	1.00[MEX][hapmap]
rs7805950	1.00[AMR][1000 genomes]
rs7806691	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs7809075	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9886322	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102867200-102871800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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