Variant report

Variant	rs7806691
Chromosome Location	chr7:102692555-102692556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102611388..102613212-chr7:102692044..102694457,2	K562	blood:
2	chr7:102692413..102696625-chr7:102698429..102700505,5	K562	blood:
3	chr7:102691392..102694110-chr7:102703544..102706469,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10233506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248567	1.00[AMR][1000 genomes]
rs10249842	1.00[AMR][1000 genomes]
rs10259205	0.81[MKK][hapmap]
rs10268849	1.00[MEX][hapmap]
rs10278727	0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs10808121	0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap]
rs11560367	1.00[MEX][hapmap]
rs13242079	1.00[MEX][hapmap]
rs1404213	1.00[MEX][hapmap]
rs1477160	1.00[MEX][hapmap]
rs1524421	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs1543987	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs1916990	0.82[YRI][hapmap]
rs1968199	1.00[MEX][hapmap]
rs1969430	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2041949	1.00[MEX][hapmap]
rs2140621	1.00[MEX][hapmap];0.86[MKK][hapmap]
rs2177550	0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap]
rs2193418	1.00[MEX][hapmap]
rs28881872	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs2898638	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs3181009	1.00[MEX][hapmap]
rs3987943	0.81[AFR][1000 genomes]
rs4255065	0.86[MKK][hapmap]
rs4576360	0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap]
rs4727558	1.00[MEX][hapmap];0.86[MKK][hapmap]
rs4727561	1.00[MEX][hapmap]
rs4729863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4729872	1.00[MEX][hapmap]
rs6465883	1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6465888	0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap]
rs6465890	1.00[MEX][hapmap]
rs6950177	1.00[MEX][hapmap]
rs6958533	1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6973702	1.00[MEX][hapmap]
rs6976639	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6977206	1.00[MEX][hapmap]
rs7341515	0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs7783856	1.00[MEX][hapmap]
rs7784337	1.00[MEX][hapmap]
rs7788867	1.00[AMR][1000 genomes]
rs7805950	0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap]
rs7806136	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs7809075	0.85[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.82[YRI][hapmap]
rs847650	0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs847653	1.00[MEX][hapmap];0.86[MKK][hapmap]
rs9649252	0.91[AFR][1000 genomes]
rs9886322	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102683400-102695800	Weak transcription	Fetal Kidney	kidney
3	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
4	chr7:102691400-102698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:102691400-102701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:102691600-102696200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:102692000-102692600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr7:102692200-102696000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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