Variant report

Variant	rs7806136
Chromosome Location	chr7:102668177-102668178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:102668099-102668213	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102664540..102668660-chr7:102669419..102673254,7	K562	blood:
2	chr7:102665867..102668570-chr7:102674851..102677774,2	K562	blood:

Variant related genes	Relation type
ENSG00000236226	TF binding region
ENSG00000236226	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10233506	1.00[AMR][1000 genomes]
rs10248567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268849	1.00[MEX][hapmap]
rs10278727	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs10281799	0.85[AFR][1000 genomes]
rs10808121	1.00[MEX][hapmap]
rs11560367	1.00[MEX][hapmap]
rs13242079	1.00[MEX][hapmap]
rs1404213	1.00[MEX][hapmap]
rs1477160	1.00[MEX][hapmap]
rs1543987	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes]
rs1608650	0.88[AFR][1000 genomes]
rs1968199	1.00[MEX][hapmap]
rs1969430	1.00[AMR][1000 genomes]
rs2041949	1.00[MEX][hapmap]
rs2140621	1.00[MEX][hapmap];0.80[MKK][hapmap]
rs2177550	1.00[MEX][hapmap]
rs2193418	1.00[MEX][hapmap]
rs28594907	0.85[AFR][1000 genomes]
rs2898638	1.00[MEX][hapmap]
rs3181009	1.00[MEX][hapmap]
rs4255065	0.80[MKK][hapmap]
rs4576360	1.00[MEX][hapmap]
rs4727558	1.00[MEX][hapmap]
rs4727561	1.00[MEX][hapmap]
rs4729863	1.00[AMR][1000 genomes]
rs4729872	1.00[MEX][hapmap]
rs6465883	1.00[MEX][hapmap];0.80[MKK][hapmap]
rs6465888	1.00[MEX][hapmap]
rs6465890	1.00[MEX][hapmap]
rs6950177	1.00[MEX][hapmap]
rs6958533	1.00[MEX][hapmap];0.80[MKK][hapmap]
rs6959130	0.85[AFR][1000 genomes]
rs6973702	1.00[MEX][hapmap]
rs6976639	1.00[AMR][1000 genomes]
rs6977206	1.00[MEX][hapmap]
rs7341515	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs7783856	1.00[MEX][hapmap]
rs7784337	1.00[MEX][hapmap]
rs7788867	1.00[AMR][1000 genomes]
rs7805950	1.00[MEX][hapmap]
rs7806691	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs7809075	1.00[MEX][hapmap]
rs847650	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs847653	1.00[MEX][hapmap];0.80[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv3374257	chr7:102636550-102671589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102666400-102668400	Weak transcription	K562	blood

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