Variant report

Variant	rs10278727
Chromosome Location	chr7:102738763-102738764
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102737570..102739269-chr7:102784132..102785986,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10224485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224625	0.87[AMR][1000 genomes]
rs10233506	0.81[AFR][1000 genomes]
rs10233912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251394	1.00[AMR][1000 genomes]
rs10261182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268849	1.00[MEX][hapmap]
rs10270034	1.00[MEX][hapmap]
rs10276193	1.00[AMR][1000 genomes]
rs10281607	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10808121	0.82[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11560367	1.00[MEX][hapmap]
rs12671524	0.93[AFR][1000 genomes]
rs13242079	1.00[MEX][hapmap]
rs1404213	1.00[MEX][hapmap]
rs1477160	1.00[MEX][hapmap]
rs1524419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543987	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs1916990	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1968199	1.00[MEX][hapmap]
rs2041949	1.00[MEX][hapmap]
rs2140621	0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs2177550	0.82[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes]
rs2193418	1.00[MEX][hapmap]
rs2411084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439727	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28881872	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs2898638	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs3181009	1.00[MEX][hapmap]
rs3987943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4255065	0.89[LWK][hapmap];0.86[MKK][hapmap]
rs4576360	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4727558	0.85[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs4727561	1.00[MEX][hapmap]
rs4729867	0.86[AFR][1000 genomes]
rs4729872	1.00[MEX][hapmap]
rs4999173	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs6465883	0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6465888	0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6465890	1.00[MEX][hapmap]
rs6465911	1.00[MEX][hapmap]
rs6950177	1.00[MEX][hapmap]
rs6958533	0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6973702	1.00[MEX][hapmap]
rs6976639	0.82[YRI][hapmap]
rs6977206	1.00[MEX][hapmap]
rs7341515	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7357142	1.00[AMR][1000 genomes]
rs7455410	0.87[AFR][1000 genomes]
rs7783856	1.00[MEX][hapmap]
rs7784337	1.00[MEX][hapmap]
rs7805950	0.82[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806136	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs7806691	0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs7809075	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs847650	1.00[MEX][hapmap];0.91[MKK][hapmap]
rs847653	0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs9886322	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv981565	chr7:102738554-102740317	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
2	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
5	chr7:102716600-102760200	Weak transcription	Lung	lung
6	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
7	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
8	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
10	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
12	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
13	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:102723400-102746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:102723600-102746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:102724000-102745800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
20	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:102725400-102753600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:102725600-102739400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:102725600-102746400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:102725600-102746400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:102726200-102742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:102727800-102753400	Weak transcription	Brain Angular Gyrus	brain
29	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
30	chr7:102728000-102760000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:102728600-102753400	Weak transcription	NHDF-Ad	bronchial
32	chr7:102729800-102745800	Weak transcription	HepG2	liver
33	chr7:102730000-102744200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:102730200-102742600	Weak transcription	NHLF	lung
35	chr7:102730200-102746400	Weak transcription	Ovary	ovary
36	chr7:102730200-102760200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:102730400-102740800	Weak transcription	HUVEC	blood vessel
39	chr7:102730600-102740400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr7:102730600-102740400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:102730600-102740800	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:102730600-102742800	Weak transcription	Brain Anterior Caudate	brain
43	chr7:102731000-102753400	Weak transcription	Hela-S3	cervix
44	chr7:102732400-102740800	Weak transcription	Fetal Brain Female	brain
45	chr7:102732400-102741400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:102732400-102744800	Weak transcription	Aorta	Aorta
47	chr7:102732400-102746000	Weak transcription	Brain Germinal Matrix	brain
48	chr7:102732400-102746000	Weak transcription	Fetal Intestine Small	intestine
49	chr7:102732400-102753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:102732600-102746400	Weak transcription	Fetal Stomach	stomach

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