Variant report

Variant	rs10224625
Chromosome Location	chr7:102913229-102913230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224485	0.87[AMR][1000 genomes]
rs10233912	0.87[AMR][1000 genomes]
rs10251394	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10261182	0.87[AMR][1000 genomes]
rs10271536	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10276193	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10278727	0.87[AMR][1000 genomes]
rs10281607	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10486852	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1524419	0.87[AMR][1000 genomes]
rs17136740	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2411084	0.87[AMR][1000 genomes]
rs28881872	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3987943	0.87[AMR][1000 genomes]
rs4478507	0.82[AFR][1000 genomes]
rs4576360	0.87[AMR][1000 genomes]
rs4999173	0.87[AMR][1000 genomes]
rs7341515	0.87[AMR][1000 genomes]
rs7357142	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7809075	0.87[AMR][1000 genomes]
rs9886322	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102907400-102919400	Weak transcription	Fetal Brain Male	brain
2	chr7:102907800-102919600	Weak transcription	Fetal Thymus	thymus
3	chr7:102907800-102920000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:102908000-102914200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:102908000-102915800	Weak transcription	Dnd41	blood
6	chr7:102909400-102920200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:102910600-102919600	Weak transcription	Fetal Stomach	stomach
8	chr7:102912800-102915000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:102912800-102918800	Weak transcription	Fetal Brain Female	brain
10	chr7:102913000-102919600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:102913000-102920000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:102913200-102914800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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