Variant report

Variant	rs10251394
Chromosome Location	chr7:102909231-102909232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10224485	1.00[AMR][1000 genomes]
rs10224625	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10233912	1.00[AMR][1000 genomes]
rs10261182	1.00[AMR][1000 genomes]
rs10271536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278727	1.00[AMR][1000 genomes]
rs10281607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10486852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1524419	1.00[AMR][1000 genomes]
rs17136740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2411084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439727	0.87[AMR][1000 genomes]
rs28881872	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3987943	1.00[AMR][1000 genomes]
rs4478507	0.87[AFR][1000 genomes]
rs4576360	1.00[AMR][1000 genomes]
rs4999173	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7341515	1.00[AMR][1000 genomes]
rs7357142	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809075	1.00[AMR][1000 genomes]
rs9886322	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102907400-102919400	Weak transcription	Fetal Brain Male	brain
2	chr7:102907800-102919600	Weak transcription	Fetal Thymus	thymus
3	chr7:102907800-102920000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:102908000-102914200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:102908000-102915800	Weak transcription	Dnd41	blood
6	chr7:102908600-102911600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:102909200-102909400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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