Variant report

Variant	rs10276193
Chromosome Location	chr7:102942901-102942902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102941783..102943355-chr7:102963516..102965427,2	K562	blood:
2	chr7:102942691..102945626-chr7:102984375..102986743,2	K562	blood:
3	chr7:102941619..102943706-chr7:102990642..102992263,2	K562	blood:
4	chr7:102941816..102944695-chr7:102945655..102947787,3	K562	blood:
5	chr7:102941619..102944987-chr7:102988206..102992263,4	K562	blood:
6	chr7:102940663..102947555-chr7:102980823..102987452,8	K562	blood:

Variant related genes	Relation type
ENSG00000105821	Chromatin interaction
ENSG00000161057	Chromatin interaction
ENSG00000235354	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10224485	1.00[AMR][1000 genomes]
rs10224625	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10233912	1.00[AMR][1000 genomes]
rs10251394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261182	1.00[AMR][1000 genomes]
rs10271536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278727	1.00[AMR][1000 genomes]
rs10281607	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10486852	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1524419	1.00[AMR][1000 genomes]
rs17136740	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2411084	1.00[AMR][1000 genomes]
rs28439727	0.87[AMR][1000 genomes]
rs28881872	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4478507	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4999173	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6976639	0.83[YRI][hapmap]
rs7341515	1.00[AMR][1000 genomes]
rs7357142	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886322	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102938400-102957000	Weak transcription	Spleen	Spleen
2	chr7:102938600-102943600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:102938600-102946400	Weak transcription	Esophagus	oesophagus
4	chr7:102938600-102951400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:102938600-102957000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:102938600-102984200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:102938800-102957000	Weak transcription	Aorta	Aorta
8	chr7:102939000-102946800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:102939000-102965200	Weak transcription	Right Ventricle	heart
10	chr7:102939000-102969200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr7:102939200-102946800	Weak transcription	Psoas Muscle	Psoas
12	chr7:102939200-102947800	Weak transcription	Fetal Brain Male	brain
13	chr7:102939200-102947800	Weak transcription	Fetal Heart	heart
14	chr7:102939200-102949600	Strong transcription	Left Ventricle	heart
15	chr7:102939200-102962000	Weak transcription	Right Atrium	heart
16	chr7:102939200-102967400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:102939200-102968400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr7:102939200-102968400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:102939200-102972400	Strong transcription	Fetal Thymus	thymus
20	chr7:102939400-102948400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr7:102939400-102950800	Weak transcription	Small Intestine	intestine
22	chr7:102939400-102958800	Weak transcription	Gastric	stomach
23	chr7:102939400-102964800	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:102939400-102965600	Strong transcription	Fetal Lung	lung
25	chr7:102939400-102966800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:102939400-102967800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:102939400-102967800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:102939400-102968000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:102939400-102968000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr7:102939400-102968200	Strong transcription	Placenta	Placenta
31	chr7:102939400-102968200	Strong transcription	HSMM	muscle
32	chr7:102939400-102969800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr7:102939600-102943200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:102939600-102946800	Strong transcription	NHDF-Ad	bronchial
35	chr7:102939600-102947800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:102939600-102948200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr7:102939600-102948800	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:102939600-102949600	Strong transcription	Thymus	Thymus
39	chr7:102939600-102963200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr7:102939600-102965400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr7:102939600-102966800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr7:102939600-102968000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:102939600-102968000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:102939600-102968000	Strong transcription	Fetal Intestine Large	intestine
45	chr7:102939600-102968000	Strong transcription	Fetal Muscle Leg	muscle
46	chr7:102939600-102968400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:102939600-102968400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:102939600-102968600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:102939600-102969800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:102939600-102970000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links