Variant report

Variant	rs7341515
Chromosome Location	chr7:102710186-102710187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102708220..102712161-chr7:102714525..102717019,5	K562	blood:
2	chr7:102668956..102671176-chr7:102710132..102712664,2	K562	blood:
3	chr7:102704633..102706824-chr7:102709048..102710835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170632	Chromatin interaction
ENSG00000161040	Chromatin interaction
ENSG00000236226	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10224485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224625	0.87[AMR][1000 genomes]
rs10233506	0.83[AFR][1000 genomes]
rs10233912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251394	1.00[AMR][1000 genomes]
rs10259205	0.92[LWK][hapmap];0.81[MKK][hapmap]
rs10261182	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268849	1.00[MEX][hapmap]
rs10276193	1.00[AMR][1000 genomes]
rs10278727	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281607	1.00[AMR][1000 genomes]
rs10808121	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11560367	1.00[MEX][hapmap]
rs12671524	0.94[AFR][1000 genomes]
rs13242079	1.00[MEX][hapmap]
rs1404213	1.00[MEX][hapmap]
rs1477160	1.00[MEX][hapmap]
rs1524419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543987	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs1916990	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1968199	1.00[MEX][hapmap]
rs2041949	1.00[MEX][hapmap]
rs2140621	0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs2177550	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs2193418	1.00[MEX][hapmap]
rs2411084	1.00[AMR][1000 genomes]
rs28439727	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28881872	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs2898638	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs3181009	1.00[MEX][hapmap]
rs3987943	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4255065	0.93[LWK][hapmap];0.86[MKK][hapmap]
rs4576360	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4727558	0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs4727561	1.00[MEX][hapmap]
rs4729867	0.88[AFR][1000 genomes]
rs4729872	1.00[MEX][hapmap]
rs4999173	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs6465883	0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6465888	1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6465890	1.00[MEX][hapmap]
rs6950177	1.00[MEX][hapmap]
rs6958533	0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs6973702	1.00[MEX][hapmap]
rs6976639	0.82[YRI][hapmap]
rs6977206	1.00[MEX][hapmap]
rs7357142	1.00[AMR][1000 genomes]
rs7455410	0.89[AFR][1000 genomes]
rs7783856	1.00[MEX][hapmap]
rs7784337	1.00[MEX][hapmap]
rs7805950	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806136	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs7806691	0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs7809075	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs847650	1.00[MEX][hapmap];0.91[MKK][hapmap]
rs847653	0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs9886322	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv981564	chr7:102704804-102712972	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102692800-102712800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:102702200-102713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102702200-102714600	Weak transcription	Ovary	ovary
5	chr7:102706800-102714000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:102709000-102714200	Weak transcription	Fetal Lung	lung
7	chr7:102709200-102710200	Enhancers	Pancreas	Pancrea

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