Variant report

Variant	rs2898638
Chromosome Location	chr7:102606654-102606655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102583093..102586318-chr7:102605440..102608597,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10236090	0.85[AFR][1000 genomes]
rs10240915	0.90[YRI][hapmap]
rs10259205	1.00[ASW][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268849	1.00[MEX][hapmap]
rs10278727	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs10808121	0.84[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.84[AFR][1000 genomes]
rs1100047	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11560367	1.00[MEX][hapmap]
rs12671524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13242079	1.00[MEX][hapmap]
rs1404213	1.00[MEX][hapmap]
rs1477160	1.00[MEX][hapmap]
rs1543987	1.00[MEX][hapmap];0.80[MKK][hapmap]
rs17605251	1.00[JPT][hapmap]
rs1916990	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1968199	1.00[MEX][hapmap]
rs1969429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2041949	1.00[MEX][hapmap]
rs2140621	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2177550	0.84[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2193418	1.00[MEX][hapmap]
rs28393249	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3181009	1.00[MEX][hapmap]
rs4255065	1.00[ASW][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4576360	1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[AFR][1000 genomes]
rs4727558	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4727561	1.00[MEX][hapmap]
rs4729867	0.81[AFR][1000 genomes]
rs4729872	1.00[MEX][hapmap]
rs6465883	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465888	1.00[MEX][hapmap];0.89[MKK][hapmap]
rs6465890	1.00[MEX][hapmap]
rs6950177	1.00[MEX][hapmap]
rs6958533	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6962336	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973702	1.00[MEX][hapmap]
rs6977206	1.00[MEX][hapmap]
rs7341515	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs7783856	1.00[MEX][hapmap]
rs7784337	1.00[MEX][hapmap]
rs7805950	0.84[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.84[AFR][1000 genomes]
rs7806136	1.00[MEX][hapmap]
rs7806691	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs7809075	1.00[MEX][hapmap];0.86[MKK][hapmap];0.82[AFR][1000 genomes]
rs847650	1.00[MEX][hapmap];0.86[MKK][hapmap]
rs847653	1.00[ASW][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs847654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs847655	1.00[AMR][1000 genomes]
rs847657	0.86[AFR][1000 genomes]
rs864709	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102591000-102619400	Weak transcription	HSMM	muscle
2	chr7:102603800-102608400	Strong transcription	K562	blood
3	chr7:102606400-102607800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:102606600-102607400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:102606600-102608400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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