Variant report

Variant	rs847654
Chromosome Location	chr7:102563186-102563187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102562952..102565366-chr7:102565830..102568184,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10236090	0.89[AFR][1000 genomes]
rs10240915	0.81[AFR][1000 genomes]
rs10259205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1100047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12671524	1.00[AMR][1000 genomes]
rs1916990	1.00[AMR][1000 genomes]
rs1969429	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2140621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2177550	1.00[AMR][1000 genomes]
rs28393249	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2898638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4255065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4727558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6465883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6962336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs847653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs847655	1.00[AMR][1000 genomes]
rs847657	0.96[AFR][1000 genomes]
rs864709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102554800-102566200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:102555600-102566400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:102555600-102566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:102558000-102566400	Weak transcription	HUVEC	blood vessel
6	chr7:102558000-102567200	Weak transcription	Fetal Kidney	kidney
7	chr7:102558200-102566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:102558200-102567600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:102558400-102566400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:102558600-102566400	Weak transcription	Fetal Heart	heart
11	chr7:102559400-102566000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:102559400-102566600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:102559600-102566400	Weak transcription	Aorta	Aorta
14	chr7:102559600-102566400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:102559600-102566400	Weak transcription	Osteobl	bone
16	chr7:102559600-102566600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:102559800-102565200	Weak transcription	Fetal Lung	lung
18	chr7:102559800-102565600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:102559800-102566400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:102559800-102566400	Weak transcription	NH-A	brain
21	chr7:102560000-102565800	Strong transcription	HSMM	muscle
22	chr7:102560600-102566400	Weak transcription	HSMMtube	muscle
23	chr7:102561400-102566400	Weak transcription	K562	blood
24	chr7:102562000-102565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:102562600-102565600	Weak transcription	Fetal Stomach	stomach

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