Variant report

Variant	rs10236090
Chromosome Location	chr7:102501785-102501786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102501221..102503373-chr7:102515985..102518701,2	MCF-7	breast:
2	chr7:102501610..102503166-chr7:102508637..102510523,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10240915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259205	0.96[AFR][1000 genomes]
rs1100047	0.89[AFR][1000 genomes]
rs1969429	0.86[AFR][1000 genomes]
rs2140621	0.89[AFR][1000 genomes]
rs28393249	0.96[AFR][1000 genomes]
rs2898638	0.85[AFR][1000 genomes]
rs4255065	0.89[AFR][1000 genomes]
rs4727558	0.89[AFR][1000 genomes]
rs6465883	0.89[AFR][1000 genomes]
rs6958533	0.89[AFR][1000 genomes]
rs6962336	0.89[AFR][1000 genomes]
rs6973115	0.89[AFR][1000 genomes]
rs847653	0.89[AFR][1000 genomes]
rs847654	0.89[AFR][1000 genomes]
rs847657	0.86[AFR][1000 genomes]
rs864709	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv608059	chr7:102470455-102504773	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102470000-102516400	Weak transcription	Pancreas	Pancrea
2	chr7:102500000-102501800	Enhancers	NHDF-Ad	bronchial
3	chr7:102500400-102503600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:102500600-102502000	Enhancers	HepG2	liver
5	chr7:102500600-102502600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:102500600-102513800	Weak transcription	Aorta	Aorta
7	chr7:102500600-102514200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:102500600-102518400	Weak transcription	Left Ventricle	heart
9	chr7:102501000-102504600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:102501000-102505800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:102501000-102511200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:102501000-102512200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:102501200-102503000	Weak transcription	A549	lung
14	chr7:102501200-102504400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:102501200-102504600	Weak transcription	K562	blood
16	chr7:102501200-102506800	Weak transcription	Fetal Kidney	kidney
17	chr7:102501200-102515800	Weak transcription	Gastric	stomach
18	chr7:102501200-102530800	Weak transcription	Ovary	ovary
19	chr7:102501400-102502000	Weak transcription	HSMM	muscle
20	chr7:102501400-102503200	Weak transcription	Fetal Lung	lung
21	chr7:102501400-102504200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:102501400-102504600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:102501600-102503000	Enhancers	Fetal Stomach	stomach
24	chr7:102501600-102504600	Weak transcription	HUVEC	blood vessel

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