Variant report

Variant	rs6976639
Chromosome Location	chr7:102805891-102805892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10233506	1.00[AMR][1000 genomes]
rs10248567	1.00[AMR][1000 genomes]
rs10249842	1.00[AMR][1000 genomes]
rs10250825	1.00[AMR][1000 genomes]
rs10270034	1.00[AMR][1000 genomes]
rs10276193	0.83[YRI][hapmap]
rs10278727	0.82[YRI][hapmap]
rs10281607	0.83[YRI][hapmap]
rs10486852	0.82[YRI][hapmap]
rs10808121	0.82[YRI][hapmap]
rs1524421	0.90[YRI][hapmap]
rs17136740	0.82[YRI][hapmap]
rs1916990	0.83[YRI][hapmap]
rs1969430	1.00[AMR][1000 genomes]
rs2411084	0.85[AFR][1000 genomes]
rs28730338	1.00[AMR][1000 genomes]
rs28881872	1.00[YRI][hapmap]
rs4478507	0.82[YRI][hapmap]
rs4576360	0.82[YRI][hapmap]
rs4729863	1.00[AMR][1000 genomes]
rs7341515	0.82[YRI][hapmap]
rs7357142	0.89[YRI][hapmap]
rs7788867	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7805950	0.82[YRI][hapmap]
rs7806136	1.00[AMR][1000 genomes]
rs7806691	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7809075	0.82[YRI][hapmap]
rs9886322	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv608063	chr7:102800697-102807435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv608064	chr7:102800799-102807435	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv970922	chr7:102805358-102810814	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102803600-102807400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:102804600-102807400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:102805200-102806600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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