Variant report

Variant	rs10248567
Chromosome Location	chr7:102724326-102724327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102723533..102726429-chr7:103048128..103049854,2	K562	blood:
2	chr7:102724225..102725917-chr7:102730430..102732210,2	MCF-7	breast:
3	chr7:102722671..102724592-chr7:102744274..102746459,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10233506	1.00[AMR][1000 genomes]
rs10249842	1.00[AMR][1000 genomes]
rs10250825	1.00[AMR][1000 genomes]
rs10270034	1.00[AMR][1000 genomes]
rs1543987	0.94[AFR][1000 genomes]
rs1608650	0.85[AFR][1000 genomes]
rs1969430	1.00[AMR][1000 genomes]
rs28730338	1.00[AMR][1000 genomes]
rs4729863	1.00[AMR][1000 genomes]
rs6976639	1.00[AMR][1000 genomes]
rs7788867	1.00[AMR][1000 genomes]
rs7806136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102734000	Weak transcription	Esophagus	oesophagus
2	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
3	chr7:102716600-102724600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:102716600-102725000	Weak transcription	Left Ventricle	heart
5	chr7:102716600-102725000	Weak transcription	Ovary	ovary
6	chr7:102716600-102725400	Weak transcription	Aorta	Aorta
7	chr7:102716600-102735600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:102716600-102737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
12	chr7:102716600-102760200	Weak transcription	Lung	lung
13	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
14	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
15	chr7:102716800-102724600	Weak transcription	NHDF-Ad	bronchial
16	chr7:102716800-102725000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:102716800-102726400	Weak transcription	HSMMtube	muscle
18	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
20	chr7:102717000-102724400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:102717000-102724400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:102717000-102724600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:102717000-102724600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr7:102717000-102725000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:102717000-102725000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:102717000-102725400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:102717000-102727400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:102717000-102729400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:102717000-102729600	Weak transcription	Brain Germinal Matrix	brain
30	chr7:102717000-102729600	Weak transcription	NHLF	lung
31	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
33	chr7:102717200-102724400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:102717200-102724400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:102717200-102725200	Weak transcription	Thymus	Thymus
36	chr7:102717400-102724400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:102717600-102724400	Weak transcription	Dnd41	blood
38	chr7:102717600-102724400	Weak transcription	HMEC	breast
39	chr7:102717600-102724600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:102717600-102724600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr7:102717600-102725000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:102717600-102725000	Weak transcription	Pancreas	Pancrea
43	chr7:102717600-102725200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:102717600-102725400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:102717600-102727200	Weak transcription	Fetal Brain Male	brain
46	chr7:102717600-102738600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
48	chr7:102717800-102725600	Weak transcription	HepG2	liver
49	chr7:102717800-102726400	Weak transcription	Hela-S3	cervix
50	chr7:102717800-102728600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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