Variant report
| Variant | rs10270034 |
|---|---|
| Chromosome Location | chr7:102929212-102929213 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:102928821..102931248-chr7:102936716..102938968,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000105819 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10233506 | 1.00[AMR][1000 genomes] |
| rs10248567 | 1.00[AMR][1000 genomes] |
| rs10249842 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10250825 | 1.00[ASW][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10268849 | 1.00[MEX][hapmap] |
| rs10278727 | 1.00[MEX][hapmap] |
| rs10486852 | 1.00[MEX][hapmap] |
| rs11560367 | 1.00[MEX][hapmap] |
| rs13242079 | 1.00[MEX][hapmap] |
| rs1477160 | 1.00[MEX][hapmap] |
| rs17136740 | 1.00[MEX][hapmap] |
| rs17142245 | 1.00[MEX][hapmap] |
| rs1968199 | 1.00[MEX][hapmap] |
| rs2041949 | 1.00[MEX][hapmap] |
| rs2193418 | 1.00[MEX][hapmap] |
| rs28730338 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28881872 | 1.00[MEX][hapmap] |
| rs2906642 | 1.00[MEX][hapmap] |
| rs3181009 | 1.00[MEX][hapmap] |
| rs4478507 | 1.00[MEX][hapmap] |
| rs4727561 | 1.00[MEX][hapmap] |
| rs6465911 | 1.00[MEX][hapmap] |
| rs6950177 | 1.00[MEX][hapmap] |
| rs6973702 | 1.00[MEX][hapmap] |
| rs6976639 | 1.00[AMR][1000 genomes] |
| rs6977206 | 1.00[MEX][hapmap] |
| rs7783856 | 1.00[MEX][hapmap] |
| rs7784337 | 1.00[MEX][hapmap] |
| rs7788867 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868996 | chr7:102332827-102991361 | ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
| 2 | nsv831084 | chr7:102778908-102964970 | Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
