Variant report
| Variant | rs2906642 |
|---|---|
| Chromosome Location | chr7:103110812-103110813 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103110722..103112367-chr7:103112649..103114305,2 | K562 | blood: | |
| 2 | chr7:103084473..103086712-chr7:103110212..103112835,2 | K562 | blood: | |
| 3 | chr7:103106731..103109453-chr7:103110183..103113152,2 | MCF-7 | breast: | |
| 4 | chr7:103084396..103086712-chr7:103110212..103112835,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234715 | Chromatin interaction |
| ENSG00000170615 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10250825 | 1.00[MEX][hapmap] |
| rs10270034 | 1.00[MEX][hapmap] |
| rs10486852 | 1.00[MEX][hapmap] |
| rs17136740 | 1.00[MEX][hapmap] |
| rs17142245 | 1.00[MEX][hapmap] |
| rs2528855 | 1.00[CEU][hapmap] |
| rs2528857 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2528878 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2711836 | 0.82[EUR][1000 genomes] |
| rs2711880 | 1.00[MEX][hapmap] |
| rs2711886 | 0.82[EUR][1000 genomes] |
| rs2906631 | 0.82[EUR][1000 genomes] |
| rs4478507 | 1.00[MEX][hapmap] |
| rs6465911 | 1.00[MEX][hapmap] |
| rs73414122 | 1.00[EUR][1000 genomes] |
| rs7788252 | 0.82[EUR][1000 genomes] |
| rs7801489 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs996078 | 1.00[CEU][hapmap] |
| rs996079 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103103600-103121400 | Weak transcription | HepG2 | liver |
