Variant report

Variant	rs2528878
Chromosome Location	chr7:103140294-103140295
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2528855	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2528857	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2711836	1.00[EUR][1000 genomes]
rs2711886	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2906631	1.00[EUR][1000 genomes]
rs2906642	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs73414122	0.82[EUR][1000 genomes]
rs7788252	1.00[EUR][1000 genomes]
rs7801489	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs996078	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs996079	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103122800-103141000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:103130800-103155000	Weak transcription	Brain Substantia Nigra	brain
3	chr7:103130800-103163600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:103131200-103145000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:103137400-103164400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:103138000-103144200	Strong transcription	HepG2	liver
7	chr7:103138800-103142800	Weak transcription	K562	blood
8	chr7:103139800-103140800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links