Variant report
| Variant | rs9886322 |
|---|---|
| Chromosome Location | chr7:102829789-102829790 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10224485 | 1.00[AMR][1000 genomes] |
| rs10224625 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs10233912 | 1.00[AMR][1000 genomes] |
| rs10251394 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10261182 | 1.00[AMR][1000 genomes] |
| rs10271536 | 1.00[AMR][1000 genomes] |
| rs10276193 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10278727 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10281607 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10486852 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10808121 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs1524419 | 1.00[AMR][1000 genomes] |
| rs17136740 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1916990 | 1.00[YRI][hapmap] |
| rs2177550 | 0.91[YRI][hapmap] |
| rs2411084 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28439727 | 0.87[AMR][1000 genomes] |
| rs28881872 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3987943 | 1.00[AMR][1000 genomes] |
| rs4478507 | 1.00[YRI][hapmap] |
| rs4576360 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4999173 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6465888 | 0.82[YRI][hapmap];0.87[AMR][1000 genomes] |
| rs6976639 | 0.83[YRI][hapmap] |
| rs7341515 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7357142 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7805950 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7806691 | 0.82[YRI][hapmap] |
| rs7809075 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868996 | chr7:102332827-102991361 | ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
| 2 | nsv831084 | chr7:102778908-102964970 | Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | esv1794417 | chr7:102814101-102928545 | Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1031395 | chr7:102816661-102868998 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:102828800-102830400 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
| 2 | chr7:102829000-102830200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
