Variant report

Variant	rs4999173
Chromosome Location	chr7:102876956-102876957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10224485	1.00[AMR][1000 genomes]
rs10224625	0.87[AMR][1000 genomes]
rs10233912	1.00[AMR][1000 genomes]
rs10251394	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261182	1.00[AMR][1000 genomes]
rs10271536	1.00[AMR][1000 genomes]
rs10276193	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10278727	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs10281607	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10486852	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs10808121	1.00[AMR][1000 genomes]
rs1524419	1.00[AMR][1000 genomes]
rs17136740	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs2411084	1.00[AMR][1000 genomes]
rs28439727	0.87[AMR][1000 genomes]
rs28881872	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3987943	1.00[AMR][1000 genomes]
rs4478507	0.84[YRI][hapmap]
rs4576360	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs6465888	0.87[AMR][1000 genomes]
rs7341515	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs7357142	1.00[AMR][1000 genomes]
rs7805950	1.00[AMR][1000 genomes]
rs7809075	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9886322	0.85[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv499230	chr7:102875319-102877886	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102876600-102881000	Weak transcription	Liver	Liver

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