Variant report

Variant	rs7455410
Chromosome Location	chr7:102676673-102676674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102673845..102676724-chr7:102700499..102703034,2	K562	blood:
2	chr7:102670106..102673764-chr7:102674096..102679357,5	K562	blood:
3	chr7:102665867..102668570-chr7:102674851..102677774,2	K562	blood:
4	chr7:102674721..102677676-chr7:102695707..102697752,2	K562	blood:
5	chr7:102648277..102650266-chr7:102675319..102678268,2	K562	blood:
6	chr7:102670106..102671989-chr7:102673775..102676730,2	K562	blood:

Variant related genes	Relation type
ENSG00000236226	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10224485	0.87[AFR][1000 genomes]
rs10233912	0.87[AFR][1000 genomes]
rs10261182	0.87[AFR][1000 genomes]
rs10278727	0.87[AFR][1000 genomes]
rs10808121	0.94[AFR][1000 genomes]
rs12671524	0.94[AFR][1000 genomes]
rs1524419	0.87[AFR][1000 genomes]
rs1916990	0.94[AFR][1000 genomes]
rs2177550	0.93[AFR][1000 genomes]
rs2411064	0.80[AFR][1000 genomes]
rs28439727	0.87[AFR][1000 genomes]
rs3987943	0.87[AFR][1000 genomes]
rs4576360	0.93[AFR][1000 genomes]
rs4729867	0.84[AFR][1000 genomes]
rs59099783	0.90[EUR][1000 genomes]
rs60545001	0.90[EUR][1000 genomes]
rs61749912	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465888	0.96[AFR][1000 genomes]
rs6465890	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341515	0.89[AFR][1000 genomes]
rs7798381	0.90[EUR][1000 genomes]
rs7805950	0.94[AFR][1000 genomes]
rs7809075	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102672000-102678400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:102676000-102677400	Weak transcription	K562	blood
3	chr7:102676600-102683800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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