Variant report

Variant	rs6959130
Chromosome Location	chr7:102483995-102483996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102483542..102485503-chr7:102492215..102494195,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10281799	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543987	0.88[AFR][1000 genomes]
rs28594907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806136	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv608059	chr7:102470455-102504773	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102454200-102484600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:102468000-102484600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:102470000-102490200	Weak transcription	Gastric	stomach
4	chr7:102470000-102516400	Weak transcription	Pancreas	Pancrea
5	chr7:102470800-102484400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:102470800-102493200	Weak transcription	Primary T cells from cord blood	blood
7	chr7:102471800-102500000	Weak transcription	Left Ventricle	heart
8	chr7:102472000-102484800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:102477800-102500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:102478000-102489200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:102478200-102500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:102478200-102500000	Weak transcription	Ovary	ovary
13	chr7:102478800-102489600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:102478800-102492600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:102482000-102484200	Weak transcription	GM12878-XiMat	blood
16	chr7:102482000-102484600	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:102482400-102484800	Weak transcription	HSMMtube	muscle
18	chr7:102482600-102484800	Weak transcription	HSMM	muscle
19	chr7:102482800-102499600	Weak transcription	Fetal Lung	lung
20	chr7:102482800-102500200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:102483000-102491200	Weak transcription	Fetal Stomach	stomach
22	chr7:102483400-102487000	Weak transcription	HepG2	liver
23	chr7:102483400-102499600	Weak transcription	K562	blood

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