No. |
Variant name |
Chromosome position |
Chromatin state |
Related regulatory elements |
Target genes |
Extended variants |
Associated traits |
1 |
rs571458726 |
chr3:52089997-52089998 |
Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers
|
Chromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
2 |
rs374933715 |
chr3:52090053-52090054 |
Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription
|
Chromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
3 |
rs148092517 |
chr3:52090158-52090159 |
Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription
|
Chromatin interactive region
|
8 gene(s)
|
Overlapped CNVs
|
n/a
|
4 |
rs538765819 |
chr3:52090276-52090277 |
Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
5 |
rs553815117 |
chr3:52090290-52090291 |
Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
6 |
rs572009424 |
chr3:52090326-52090327 |
Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
7 |
rs534175599 |
chr3:52090503-52090504 |
Active TSS Flanking Active TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
8 |
rs541808196 |
chr3:52090531-52090532 |
Active TSS Flanking Active TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
9 |
rs542627967 |
chr3:52090581-52090582 |
Active TSS Flanking Active TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
10 |
rs554218405 |
chr3:52090588-52090589 |
Active TSS Flanking Active TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
11 |
rs574001754 |
chr3:52090625-52090626 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
12 |
rs370131035 |
chr3:52090654-52090655 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription
|
TF binding regionCpG islandChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
13 |
rs544491726 |
chr3:52090766-52090767 |
Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription
|
TF binding regionCpG islandChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
14 |
rs562786354 |
chr3:52090848-52090849 |
Active TSS Flanking Active TSS
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
15 |
rs373346098 |
chr3:52090959-52090960 |
Active TSS Flanking Active TSS
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
16 |
rs545208868 |
chr3:52090960-52090961 |
Active TSS Flanking Active TSS
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
17 |
rs144010185 |
chr3:52090987-52090988 |
Active TSS Flanking Active TSS
|
TF binding regionChromatin interactive region
|
10 gene(s)
|
Overlapped CNVs
|
n/a
|
18 |
rs527758216 |
chr3:52091078-52091079 |
Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
19 |
rs549362399 |
chr3:52091110-52091111 |
Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
20 |
rs561228020 |
chr3:52091111-52091112 |
Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
21 |
rs531677641 |
chr3:52091184-52091185 |
Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
22 |
rs550097479 |
chr3:52091197-52091198 |
Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
23 |
rs375377016 |
chr3:52091226-52091227 |
Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
24 |
rs192588423 |
chr3:52091240-52091241 |
Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
Overlapped CNVs
|
n/a
|
25 |
rs9851576 |
chr3:52091254-52091255 |
Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS
|
TF binding regionChromatin interactive region
|
9 gene(s)
|
LD-proxies of rSNPOverlapped rCNV
|
n/a
|