Variant report

Variant	rs373346098
Chromosome Location	chr3:52090959-52090960
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr3:52090616-52091430	GM12878	blood:	n/a	n/a
2	SIN3A	chr3:52090567-52091511	GM12878	blood:	n/a	chr3:52091337-52091346
3	POLR2A	chr3:52090932-52091951	U87	brain:	n/a	n/a
4	TBP	chr3:52090932-52091712	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:52090438-52091336	HepG2	liver:	n/a	n/a
6	SIN3AK20	chr3:52090527-52091497	H1-hESC	embryonic stem cell:	n/a	n/a
7	RUNX3	chr3:52090568-52091830	GM12878	blood:	n/a	n/a
8	MAX	chr3:52090731-52091526	A549	lung:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
9	MAZ	chr3:52090543-52091787	Hela-S3	cervix:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
10	EP300	chr3:52090636-52091473	K562	blood:	n/a	n/a
11	MAZ	chr3:52088560-52092528	IMR90	lung:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
12	POLR2A	chr3:52090426-52091951	H1-neurons	neurons:	n/a	n/a
13	REST	chr3:52089552-52092345	H1-neurons	neurons:	n/a	chr3:52091575-52091588 chr3:52091918-52091931 chr3:52091489-52091502
14	RCOR1	chr3:52090612-52091688	K562	blood:	n/a	n/a
15	POLR2A	chr3:52090938-52091899	U87	brain:	n/a	n/a
16	TEAD4	chr3:52090820-52091506	K562	blood:	n/a	n/a
17	CHD2	chr3:52090566-52091794	Hela-S3	cervix:	n/a	chr3:52090988-52090998 chr3:52090658-52090665
18	POLR2A	chr3:52090008-52091698	NB4	blood:	n/a	n/a
19	MYC	chr3:52089257-52091661	K562	blood:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
20	TBL1XR1	chr3:52090576-52091691	GM12878	blood:	n/a	n/a
21	MYC	chr3:52089648-52091728	NB4	blood:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
22	BHLHE40	chr3:52090568-52091738	K562	blood:	n/a	chr3:52091498-52091514 chr3:52090590-52090606
23	POLR2A	chr3:52090456-52091803	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr3:52089731-52091776	K562	blood:	n/a	n/a
25	HA-E2F1	chr3:52090611-52091850	MCF-7	breast:	n/a	chr3:52091635-52091645 chr3:52091822-52091831 chr3:52091442-52091452 chr3:52090658-52090665 chr3:52091638-52091647 chr3:52091523-52091535 chr3:52091495-52091504
26	MAZ	chr3:52090460-52091867	GM12878	blood:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
27	RCOR1	chr3:52090738-52091397	K562	blood:	n/a	n/a
28	NRF1	chr3:52090395-52092278	SK-N-SH	brain:	n/a	chr3:52091535-52091544 chr3:52090837-52090851 chr3:52091546-52091555 chr3:52091643-52091657 chr3:52091575-52091584
29	CHD2	chr3:52090894-52091692	H1-hESC	embryonic stem cell:	n/a	chr3:52090988-52090998
30	CTCF	chr3:52090840-52090990	GM12873	blood:	n/a	n/a
31	MAZ	chr3:52090558-52091734	HepG2	liver:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
32	BACH1	chr3:52090669-52092031	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAX	chr3:52090445-52091921	HCT-116	colon:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
34	CREB1	chr3:52090810-52091839	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr3:52090947-52091433	GM12892	blood:	n/a	n/a
36	SP1	chr3:52090462-52091770	A549	lung:	n/a	chr3:52091496-52091505 chr3:52091494-52091506 chr3:52091535-52091545 chr3:52091399-52091413 chr3:52091534-52091546 chr3:52091534-52091546 chr3:52091535-52091544 chr3:52090948-52090957 chr3:52090678-52090687 chr3:52091531-52091545 chr3:52091494-52091506 chr3:52091495-52091504 chr3:52091417-52091438 chr3:52090947-52090957 chr3:52091536-52091545 chr3:52091491-52091505 chr3:52091535-52091545
37	USF1	chr3:52090920-52091773	HCT-116	colon:	n/a	chr3:52091498-52091514 chr3:52091335-52091346
38	POLR2A	chr3:52090934-52091315	HCT-116	colon:	n/a	n/a
39	HCFC1	chr3:52090458-52092025	Hela-S3	cervix:	n/a	n/a
40	MAX	chr3:52090558-52091677	Hela-S3	cervix:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
41	MAX	chr3:52089605-52091926	ECC-1	luminal epithelium:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
42	MAX	chr3:52090508-52091948	HepG2	liver:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
43	CHD2	chr3:52090621-52091791	GM12878	blood:	n/a	chr3:52090988-52090998 chr3:52090658-52090665
44	MYBL2	chr3:52090918-52091282	HepG2	liver:	n/a	n/a
45	STAT5A	chr3:52090621-52091502	GM12878	blood:	n/a	chr3:52090674-52090686
46	YY1	chr3:52090521-52091052	GM12878	blood:	n/a	chr3:52090591-52090605
47	MAZ	chr3:52090472-52091819	K562	blood:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
48	TCF12	chr3:52090823-52091421	A549	lung:	n/a	n/a
49	MAX	chr3:52089267-52091929	A549	lung:	n/a	chr3:52091334-52091347 chr3:52091339-52091347 chr3:52091535-52091545 chr3:52091336-52091345 chr3:52091336-52091345 chr3:52091331-52091350 chr3:52091335-52091346
50	ZBTB7A	chr3:52090537-52091107	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:52016320..52018909-chr3:52089400..52091632,2	MCF-7	breast:
2	chr1:149222699..149225112-chr3:52088904..52091700,2	MCF-7	breast:
3	chr19:12901888..12902868-chr3:52090426..52090997,2	Hela-S3	cervix:
4	chr3:52089814..52091351-chr3:52187528..52189873,2	K562	blood:
5	chr3:52028061..52031321-chr3:52088873..52092735,5	MCF-7	breast:
6	chr3:52026823..52031380-chr3:52087204..52091486,4	K562	blood:
7	chr3:51974263..51977386-chr3:52088681..52091436,3	K562	blood:
8	chr3:52088485..52093169-chr3:52093699..52100396,11	MCF-7	breast:
9	chr3:52015921..52019600-chr3:52088214..52092499,4	K562	blood:
10	chr3:51975919..51976628-chr3:52090698..52091583,2	K562	blood:

Variant related genes	Relation type
DUSP7	TF binding region
ENSG00000041880	Chromatin interaction
ENSG00000162244	Chromatin interaction
ENSG00000243989	Chromatin interaction
ENSG00000164087	Chromatin interaction
ENSG00000114779	Chromatin interaction
ENSG00000171223	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000114767	Chromatin interaction
ENSG00000256097	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1003453	chr3:51962081-52099441	Active TSS Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv1804090	chr3:51962081-52140591	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	esv1835339	chr3:51962081-52140591	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1003581	chr3:51973395-52108645	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv1001062	chr3:51973395-52134638	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	nsv876780	chr3:51981021-52101799	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv519445	chr3:52004317-52367932	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
9	nsv876786	chr3:52041566-52236762	Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv984541	chr3:52055970-52285682	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	esv1792042	chr3:52070955-52091254	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
12	esv1793040	chr3:52070955-52091254	Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
13	esv1797975	chr3:52070955-52091254	Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
14	esv1798814	chr3:52070955-52091254	Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
15	esv1797189	chr3:52070955-52101799	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
16	esv1798365	chr3:52070955-52101799	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv590282	chr3:52088204-52097060	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	esv3355709	chr3:52088937-52091485	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
19	esv13230	chr3:52089806-52091042	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
20	esv1849409	chr3:52089837-52090962	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
21	nsv590287	chr3:52089837-52090962	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
22	esv1850772	chr3:52089837-52091013	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
23	nsv590288	chr3:52089837-52091013	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
24	esv1795517	chr3:52089837-52091254	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
25	esv1796006	chr3:52089837-52091254	Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
26	esv1797764	chr3:52089837-52091254	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
27	esv1834163	chr3:52089837-52091254	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
28	esv1838036	chr3:52089837-52091254	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
29	esv1839564	chr3:52089837-52091254	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
30	nsv590289	chr3:52089837-52091254	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
31	esv1836489	chr3:52089837-52101799	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
32	esv1838771	chr3:52089837-52101799	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
33	esv1819966	chr3:52089861-52090962	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
34	esv1833638	chr3:52089861-52090962	Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
35	nsv590293	chr3:52089889-52097060	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
36	nsv590295	chr3:52089941-52090962	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
37	nsv590296	chr3:52089941-52091254	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
38	nsv590299	chr3:52090344-52096432	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
39	nsv590300	chr3:52090597-52096432	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52087400-52091800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:52088600-52091200	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr3:52088600-52091600	Active TSS	Psoas Muscle	Psoas
4	chr3:52088600-52091800	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr3:52088600-52091800	Active TSS	Aorta	Aorta
6	chr3:52088600-52092000	Active TSS	Fetal Kidney	kidney
7	chr3:52088600-52092000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr3:52088800-52091400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:52088800-52091600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:52088800-52091600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:52088800-52091600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:52088800-52091600	Active TSS	Brain Substantia Nigra	brain
13	chr3:52088800-52091600	Active TSS	Gastric	stomach
14	chr3:52088800-52091600	Active TSS	Lung	lung
15	chr3:52088800-52091600	Active TSS	Osteobl	bone
16	chr3:52088800-52091800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:52088800-52091800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr3:52088800-52091800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr3:52088800-52091800	Active TSS	Ovary	ovary
20	chr3:52088800-52091800	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr3:52088800-52091800	Active TSS	Small Intestine	intestine
22	chr3:52089000-52091000	Active TSS	Brain Angular Gyrus	brain
23	chr3:52089000-52091600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:52089000-52091600	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr3:52089000-52091600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:52089000-52091600	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr3:52089000-52091600	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr3:52089000-52091600	Active TSS	Duodenum Mucosa	Duodenum
29	chr3:52089000-52091600	Active TSS	HSMMtube	muscle
30	chr3:52089000-52091600	Active TSS	K562	blood
31	chr3:52089000-52091800	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr3:52089000-52091800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:52089000-52091800	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr3:52089000-52091800	Active TSS	Left Ventricle	heart
35	chr3:52089000-52092000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:52089000-52092000	Active TSS	A549	lung
37	chr3:52089200-52091800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:52089400-52091800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr3:52089600-52091600	Active TSS	Placenta Amnion	Placenta Amnion
40	chr3:52089600-52091600	Active TSS	Thymus	Thymus
41	chr3:52089800-52091600	Active TSS	NHEK	skin
42	chr3:52089800-52091800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:52090000-52091000	Active TSS	Spleen	Spleen
44	chr3:52090000-52091600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:52090000-52091800	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr3:52090000-52091800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:52090200-52091200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:52090200-52091400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:52090200-52091800	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr3:52090200-52091800	Active TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links