Variant report

Variant	nsv598954
Chromosome Location	chr5:94783175-94859599
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:199)
CpG islands
(count:123)
Chromatin interactive
region (count:40)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:199 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:94829849-94829850	K562	blood:	n/a	n/a
2	BACH1	chr5:94783398-94783516	K562	blood:	n/a	n/a
3	BACH1	chr5:94808083-94808164	K562	blood:	n/a	n/a
4	CBX3	chr5:94823566-94823944	HCT-116	colon:	n/a	n/a
5	CBX3	chr5:94823592-94823950	K562	blood:	n/a	n/a
6	CEBPB	chr5:94785521-94785774	IMR90	lung:	n/a	chr5:94785590-94785601 chr5:94785588-94785605 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785600 chr5:94785622-94785633 chr5:94785589-94785600
7	CEBPB	chr5:94827898-94828004	A549	lung:	n/a	n/a
8	CEBPB	chr5:94785526-94785688	A549	lung:	n/a	chr5:94785590-94785601 chr5:94785588-94785605 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785600 chr5:94785622-94785633 chr5:94785589-94785600
9	CEBPB	chr5:94792249-94792525	HepG2	liver:	n/a	chr5:94792347-94792358
10	CEBPB	chr5:94795746-94795922	K562	blood:	n/a	n/a
11	CEBPB	chr5:94785431-94785715	K562	blood:	n/a	chr5:94785590-94785601 chr5:94785588-94785605 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785600 chr5:94785622-94785633 chr5:94785589-94785600
12	CEBPB	chr5:94785461-94785751	HepG2	liver:	n/a	chr5:94785590-94785601 chr5:94785588-94785605 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785602 chr5:94785589-94785600 chr5:94785622-94785633 chr5:94785589-94785600
13	CEBPB	chr5:94840559-94840652	A549	lung:	n/a	n/a
14	CEBPB	chr5:94792249-94792464	K562	blood:	n/a	chr5:94792347-94792358
15	CTCF	chr5:94807740-94807890	HAc	cerebellar:	n/a	n/a
16	CTCF	chr5:94827480-94827630	HCPEpiC	choroid plexus:	n/a	chr5:94827574-94827595
17	CTCF	chr5:94827495-94827645	GM12878	blood:	n/a	chr5:94827574-94827595
18	CTCF	chr5:94785360-94785510	NHEK	skin:	n/a	chr5:94785415-94785428
19	CTCF	chr5:94807780-94807930	HBMEC	blood vessel:	n/a	n/a
20	CTCF	chr5:94857873-94857908	Lung_OC	lung:	n/a	n/a
21	CTCF	chr5:94807760-94807910	HBMEC	blood vessel:	n/a	n/a
22	CTCF	chr5:94807660-94807810	BE2_C	brain:	n/a	n/a
23	CTCF	chr5:94807793-94807867	MCF-7	breast:	n/a	n/a
24	CTCF	chr5:94843760-94843910	HRPEpiC	eye:	n/a	chr5:94843844-94843862 chr5:94843839-94843860 chr5:94843849-94843857
25	CTCF	chr5:94807799-94807883	MCF-7	breast:	n/a	n/a
26	CTCF	chr5:94798800-94798950	MCF-7	breast:	n/a	n/a
27	CTCF	chr5:94807740-94807890	HPAF	blood vessel:	n/a	n/a
28	CTCF	chr5:94807780-94807930	HRE	kidney:	n/a	n/a
29	CTCF	chr5:94785040-94785190	Caco-2	colon:	n/a	n/a
30	CTCF	chr5:94807900-94808050	RPTEC	kidney:	n/a	n/a
31	CTCF	chr5:94807800-94807950	SAEC	small airway:	n/a	n/a
32	CTCF	chr5:94807760-94807910	HVMF	connective:	n/a	n/a
33	CTCF	chr5:94807740-94807890	HMF	breast:	n/a	n/a
34	CTCF	chr5:94807780-94807930	AG04450	lung:	n/a	n/a
35	CTCF	chr5:94843820-94843881	LNCaP	prostate:	n/a	chr5:94843844-94843862 chr5:94843839-94843860 chr5:94843849-94843857
36	CTCF	chr5:94807740-94807890	HCPEpiC	choroid plexus:	n/a	n/a
37	CTCF	chr5:94807817-94807897	NHEK	skin:	n/a	n/a
38	CTCF	chr5:94813832-94813862	Lung_OC	lung:	n/a	n/a
39	CTCF	chr5:94807680-94807830	BJ	skin:	n/a	n/a
40	CTCF	chr5:94807700-94807850	HA-sp	spinal cord:	n/a	n/a
41	CTCF	chr5:94807771-94807916	ProgFib	skin:	n/a	n/a
42	CTCF	chr5:94807752-94807935	Fibrobl	skin:	n/a	n/a
43	CTCF	chr5:94807780-94807930	AG10803	skin:	n/a	n/a
44	CTCF	chr5:94807760-94807910	AG04449	skin:	n/a	n/a
45	CTCF	chr5:94843798-94843942	GM12878	blood:	n/a	chr5:94843844-94843862 chr5:94843839-94843860 chr5:94843849-94843857
46	CTCF	chr5:94828343-94828525	K562	blood:	n/a	n/a
47	CTCF	chr5:94807740-94807890	AG04450	lung:	n/a	n/a
48	CTCF	chr5:94807780-94807930	NHEK	skin:	n/a	n/a
49	CTCF	chr5:94807818-94807887	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr5:94785360-94785510	HEK293	kidney:	n/a	chr5:94785415-94785428

(count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:94784489-94784539	NT2-D1	testis:	n/a
2	chr5:94784489-94784539	NT2-D1	testis:	n/a
3	chr5:94784489-94784539	HepG2	liver:	n/a
4	chr5:94844511-94844561	GM12892	blood:	n/a
5	chr5:94844511-94844561	HPAEpiC	pulmonary alveolar:	n/a
6	chr5:94784489-94784539	SK-N-SH	brain:	n/a
7	chr5:94844511-94844561	NHDF-neo	bronchial:	n/a
8	chr5:94784489-94784539	AoSMC	blood vessel:	n/a
9	chr5:94784489-94784539	HAEpiC	amniotic membrane:	n/a
10	chr5:94784489-94784539	IMR90	lung:	fetal
11	chr5:94844511-94844561	GM06990	blood:	n/a
12	chr5:94844511-94844561	ECC-1	luminal epithelium:	n/a
13	chr5:94844511-94844561	SK-N-MC	brain:	n/a
14	chr5:94844511-94844561	HCPEpiC	choroid plexus:	n/a
15	chr5:94844511-94844561	HRCEpiC	kidney:	n/a
16	chr5:94784489-94784539	SKMC	muscle:	n/a
17	chr5:94844511-94844561	HEK293	kidney:	embryo
18	chr5:94784489-94784539	GM06990	blood:	n/a
19	chr5:94844511-94844561	AG09309	skin:	n/a
20	chr5:94844511-94844561	AG04449	skin:	fetal
21	chr5:94784489-94784539	SK-N-SH_RA	brain:	n/a
22	chr5:94844511-94844561	SK-N-SH	brain:	n/a
23	chr5:94784489-94784539	HCF	heart:	n/a
24	chr5:94784489-94784539	NHBE	bronchial:	n/a
25	chr5:94784489-94784539	AG10803	skin:	n/a
26	chr5:94844511-94844561	ProgFib	skin:	n/a
27	chr5:94784489-94784539	SAEC	small airway:	n/a
28	chr5:94784489-94784539	LNCaP	prostate:	n/a
29	chr5:94844511-94844561	Hela-S3	cervix:	n/a
30	chr5:94784489-94784539	MCF10A-Er-Src	breast:	n/a
31	chr5:94784489-94784539	AG04449	skin:	fetal
32	chr5:94844511-94844561	AoSMC	blood vessel:	n/a
33	chr5:94844511-94844561	HCT-116	colon:	n/a
34	chr5:94844511-94844561	NB4	blood:	n/a
35	chr5:94844511-94844561	K562	blood:	n/a
36	chr5:94844511-94844561	T-47D	breast:	n/a
37	chr5:94784489-94784539	BJ	skin:	n/a
38	chr5:94784489-94784539	K562	blood:	n/a
39	chr5:94784489-94784539	HRPEpiC	eye:	n/a
40	chr5:94844511-94844561	A549	lung:	n/a
41	chr5:94784489-94784539	HNPCEpiC	eye:	n/a
42	chr5:94784489-94784539	MCF-7	breast:	n/a
43	chr5:94844511-94844561	HEEpiC	esophagus:	n/a
44	chr5:94844511-94844561	NH-A	brain:	n/a
45	chr5:94784489-94784539	HEK293	kidney:	embryo
46	chr5:94844511-94844561	HUVEC	blood vessel:	n/a
47	chr5:94784489-94784539	HCM	heart:	n/a
48	chr5:94844511-94844561	AG04450	lung:	fetal
49	chr5:94784489-94784539	GM12878	blood:	n/a
50	chr5:94784489-94784539	T-47D	breast:	n/a

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:94797653..94799389-chr5:94800929..94802912,2	K562	blood:
2	chr5:94792282..94796231-chr5:94797879..94800684,4	K562	blood:
3	chr5:94830912..94834910-chr5:94838887..94842661,5	K562	blood:
4	chr5:94841082..94843868-chr5:94850976..94852780,2	K562	blood:
5	chr5:94810168..94812031-chr5:94812171..94814242,2	MCF-7	breast:
6	chr5:94792282..94796231-chr5:94797879..94800684,4	K562	blood:
7	chr5:94835766..94839248-chr5:94841208..94845104,3	K562	blood:
8	chr5:94774570..94777503-chr5:94779746..94783694,3	K562	blood:
9	chr5:94788029..94790284-chr5:94790641..94792181,2	K562	blood:
10	chr5:94815715..94817542-chr5:94820797..94823312,2	K562	blood:
11	chr5:94824257..94827228-chr5:94828970..94832558,4	K562	blood:
12	chr5:94787545..94789529-chr5:94790641..94792240,2	K562	blood:
13	chr5:94831708..94834724-chr5:94836211..94838681,3	K562	blood:
14	chr5:94818513..94820922-chr5:94826927..94830240,3	K562	blood:
15	chr5:94792282..94794324-chr5:94798104..94800472,2	K562	blood:
16	chr5:94818513..94820922-chr5:94826927..94830240,3	K562	blood:
17	chr5:94827564..94830154-chr5:94864488..94867318,2	K562	blood:
18	chr5:94815715..94817542-chr5:94820797..94823312,2	K562	blood:
19	chr5:94792884..94795047-chr5:94796049..94797784,2	MCF-7	breast:
20	chr5:94840762..94845764-chr5:94846022..94849276,7	K562	blood:
21	chr5:94788029..94790284-chr5:94790641..94792181,2	K562	blood:
22	chr5:94835766..94839248-chr5:94841208..94845104,3	K562	blood:
23	chr5:94822418..94825374-chr5:94981248..94983908,2	K562	blood:
24	chr5:94789443..94791165-chr5:94792736..94794259,2	K562	blood:
25	chr5:94796017..94797723-chr5:94996114..94998277,2	K562	blood:
26	chr5:94821124..94823692-chr5:94830042..94832328,2	K562	blood:
27	chr5:94792884..94795047-chr5:94796049..94797784,2	MCF-7	breast:
28	chr5:94787545..94789529-chr5:94790641..94792240,2	K562	blood:
29	chr5:94797653..94799389-chr5:94800929..94802912,2	K562	blood:
30	chr5:94831708..94834724-chr5:94836211..94838681,3	K562	blood:
31	chr5:94789443..94791165-chr5:94792736..94794259,2	K562	blood:
32	chr5:94791113..94793048-chr5:94801350..94803549,2	K562	blood:
33	chr5:94853908..94855767-chr5:94886325..94888751,2	K562	blood:
34	chr5:94768113..94770869-chr5:94781811..94784172,2	K562	blood:
35	chr5:94810168..94812031-chr5:94812171..94814242,2	MCF-7	breast:
36	chr5:94791113..94793048-chr5:94801350..94803549,2	K562	blood:
37	chr5:94779335..94782524-chr5:94785930..94789104,3	MCF-7	breast:
38	chr5:94840762..94844216-chr5:94846022..94849276,5	K562	blood:
39	chr5:94854160..94855779-chr5:94859258..94861480,2	MCF-7	breast:
40	chr5:94792282..94794324-chr5:94798104..94800472,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM81B-2	chr5:94796941-94798112	NONHSAT102843
2	lnc-FAM81B-1	chr5:94796346-94796855	NONHSAT102842
3	lnc-FAM81B-3	chr5:94798402-94799375	NONHSAT102844

No data

Variant related genes	Relation type
RNU6-308P	TF binding region
TTC37	TF binding region
RNU6-308P	CpG island
TTC37	CpG island
ENSG00000225165	chromatin interactions
ENSG00000198677	chromatin interactions
ENSG00000175449	chromatin interactions

Extended variants
information (count: 2654 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:2654 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2731829	chr5:94783175-94783176	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs78587354	chr5:94783189-94783190	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs137932421	chr5:94783216-94783217	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs376643394	chr5:94783245-94783246	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs377643627	chr5:94783249-94783250	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs559569815	chr5:94783262-94783263	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs546663922	chr5:94783271-94783272	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs114547621	chr5:94783324-94783325	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs542139582	chr5:94783391-94783392	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs561841470	chr5:94783406-94783407	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs367791079	chr5:94783424-94783425	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs185710750	chr5:94783448-94783449	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs570573336	chr5:94783467-94783468	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs372694301	chr5:94783510-94783511	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs6556874	chr5:94783620-94783621	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs190518374	chr5:94783621-94783622	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs183634595	chr5:94783622-94783623	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs566448154	chr5:94783629-94783630	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs376908600	chr5:94783631-94783632	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs142506003	chr5:94783633-94783634	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs143862672	chr5:94783640-94783641	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs540866079	chr5:94783876-94783877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs556987075	chr5:94783895-94783896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs192084559	chr5:94783905-94783906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539785635	chr5:94783924-94783925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370833171	chr5:94783932-94783933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564155081	chr5:94783973-94783974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553074583	chr5:94783980-94783981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs202182153	chr5:94784007-94784008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs369592468	chr5:94784020-94784021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200117615	chr5:94784021-94784022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs182756239	chr5:94784023-94784024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371659677	chr5:94784049-94784050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200218795	chr5:94784078-94784079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs148203459	chr5:94784082-94784083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs147322096	chr5:94784083-94784084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77360423	chr5:94784126-94784127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199697879	chr5:94784133-94784134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs532902276	chr5:94784187-94784188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561125801	chr5:94784277-94784278	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs546708881	chr5:94784279-94784280	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs559872619	chr5:94784312-94784313	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs377727556	chr5:94784332-94784333	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs528930500	chr5:94784338-94784339	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs548431922	chr5:94784339-94784340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs568415982	chr5:94784372-94784373	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs56864403	chr5:94784417-94784418	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs577807073	chr5:94784418-94784419	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187637586	chr5:94784447-94784448	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550777574	chr5:94784481-94784482	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Mental retardation	19471318	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
Williams Syndrome	20824207	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:2046 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94777000-94798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:94778000-94783200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:94778000-94783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:94779000-94784800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:94780400-94810800	Weak transcription	Pancreas	Pancrea
6	chr5:94781000-94783400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:94781200-94783200	Enhancers	NHEK	skin
8	chr5:94781200-94783600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:94781200-94783600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:94781400-94783400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:94781400-94783400	Enhancers	NH-A	brain
12	chr5:94781400-94783600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:94781400-94783600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:94781400-94783600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:94781400-94783600	Enhancers	K562	blood
16	chr5:94781600-94783200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:94782000-94783400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr5:94782000-94810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:94782200-94783200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:94782200-94783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:94782200-94784200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:94782600-94784800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:94782600-94800000	Weak transcription	HMEC	breast
24	chr5:94782800-94783400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:94782800-94783400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:94782800-94783400	Enhancers	Right Atrium	heart
27	chr5:94782800-94783400	Enhancers	Stomach Mucosa	stomach
28	chr5:94782800-94783600	Enhancers	Fetal Muscle Leg	muscle
29	chr5:94782800-94783600	Enhancers	Placenta	Placenta
30	chr5:94783000-94783200	Weak transcription	HSMMtube	muscle
31	chr5:94783000-94783400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr5:94783000-94783400	Enhancers	Gastric	stomach
33	chr5:94783000-94783400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr5:94783200-94783400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr5:94783200-94783400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:94783200-94783400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr5:94783200-94783400	Enhancers	Left Ventricle	heart
38	chr5:94783200-94783600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:94783200-94783600	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr5:94783200-94783600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr5:94783200-94796000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:94783400-94784400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:94783400-94784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:94783400-94784400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr5:94783400-94784600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr5:94783400-94784600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:94783400-94795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:94783400-94795800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr5:94783400-94798600	Weak transcription	Gastric	stomach
50	chr5:94783400-94798600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links