Variant report

Variant	rs561125801
Chromosome Location	chr5:94784277-94784278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94777000-94798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:94779000-94784800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:94780400-94810800	Weak transcription	Pancreas	Pancrea
4	chr5:94782000-94810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:94782600-94784800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:94782600-94800000	Weak transcription	HMEC	breast
7	chr5:94783200-94796000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:94783400-94784400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:94783400-94784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:94783400-94784400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:94783400-94784600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:94783400-94784600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:94783400-94795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:94783400-94795800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:94783400-94798600	Weak transcription	Gastric	stomach
16	chr5:94783400-94798600	Weak transcription	Left Ventricle	heart
17	chr5:94783600-94784600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:94783600-94784800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:94783600-94797200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:94783600-94798400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:94784200-94785600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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