Variant report

Variant	nsv602908
Chromosome Location	chr6:35333799-35408959
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1551)
CpG islands
(count:733)
Chromatin interactive
region (count:117)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1551 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:35336095-35336840	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:35353440-35353607	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:35339483-35339901	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:35370124-35370816	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:35338330-35338339	K562	blood:	n/a	n/a
6	ARID3A	chr6:35382989-35383735	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:35338252-35338493	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:35361195-35361536	K562	blood:	n/a	n/a
9	ARID3A	chr6:35396271-35396729	HepG2	liver:	n/a	n/a
10	ATF1	chr6:35337926-35338382	K562	blood:	n/a	n/a
11	ATF2	chr6:35337767-35338375	GM12878	blood:	n/a	n/a
12	ATF2	chr6:35335718-35336182	GM12878	blood:	n/a	n/a
13	ATF2	chr6:35336229-35336848	GM12878	blood:	n/a	n/a
14	ATF2	chr6:35336231-35336617	GM12878	blood:	n/a	n/a
15	ATF2	chr6:35369816-35370255	GM12878	blood:	n/a	n/a
16	ATF3	chr6:35338110-35338474	A549	lung:	n/a	n/a
17	ATF3	chr6:35407157-35407351	K562	blood:	n/a	n/a
18	ATF3	chr6:35362109-35362420	K562	blood:	n/a	n/a
19	ATF3	chr6:35354815-35355052	K562	blood:	n/a	n/a
20	BACH1	chr6:35361244-35361491	K562	blood:	n/a	n/a
21	BATF	chr6:35369898-35370257	GM12878	blood:	n/a	n/a
22	BATF	chr6:35336169-35336679	GM12878	blood:	n/a	chr6:35336396-35336405
23	BATF	chr6:35335734-35336689	GM12878	blood:	n/a	chr6:35336396-35336405
24	BCL11A	chr6:35336280-35336656	GM12878	blood:	n/a	n/a
25	BCLAF1	chr6:35336043-35336784	GM12878	blood:	n/a	chr6:35336067-35336076 chr6:35336054-35336063
26	BHLHE40	chr6:35382929-35383603	HepG2	liver:	n/a	n/a
27	BHLHE40	chr6:35364778-35365019	K562	blood:	n/a	n/a
28	BHLHE40	chr6:35336206-35336715	HepG2	liver:	n/a	n/a
29	BHLHE40	chr6:35369900-35370307	GM12878	blood:	n/a	n/a
30	BHLHE40	chr6:35377200-35377221	K562	blood:	n/a	n/a
31	BHLHE40	chr6:35361595-35362430	K562	blood:	n/a	n/a
32	BHLHE40	chr6:35337786-35338302	K562	blood:	n/a	n/a
33	BHLHE40	chr6:35374200-35374326	K562	blood:	n/a	n/a
34	BHLHE40	chr6:35383074-35383353	K562	blood:	n/a	n/a
35	BHLHE40	chr6:35396260-35396788	HepG2	liver:	n/a	n/a
36	BRCA1	chr6:35382778-35383456	HepG2	liver:	n/a	n/a
37	BRCA1	chr6:35396384-35396854	HepG2	liver:	n/a	n/a
38	CBX3	chr6:35353017-35353259	K562	blood:	n/a	n/a
39	CBX3	chr6:35397213-35397703	K562	blood:	n/a	n/a
40	CBX3	chr6:35335238-35336894	HCT-116	colon:	n/a	n/a
41	CBX3	chr6:35337864-35338309	K562	blood:	n/a	n/a
42	CBX3	chr6:35396865-35397783	K562	blood:	n/a	n/a
43	CCNT2	chr6:35387389-35387589	K562	blood:	n/a	n/a
44	CCNT2	chr6:35364796-35364928	K562	blood:	n/a	n/a
45	CCNT2	chr6:35361194-35361434	K562	blood:	n/a	n/a
46	CEBPB	chr6:35347256-35347267	K562	blood:	n/a	n/a
47	CEBPB	chr6:35336198-35336577	HepG2	liver:	n/a	n/a
48	CEBPB	chr6:35354795-35355057	H1-hESC	embryonic stem cell:	n/a	n/a
49	CEBPB	chr6:35377259-35377291	HepG2	liver:	n/a	n/a
50	CEBPB	chr6:35336224-35336801	GM12878	blood:	n/a	n/a

(count:733 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:35395209-35395259	AoSMC	blood vessel:	n/a
2	chr6:35395209-35395259	AoSMC	blood vessel:	n/a
3	chr6:35392736-35392786	T-47D	breast:	n/a
4	chr6:35354049-35354099	GM06990	blood:	n/a
5	chr6:35392306-35392356	HMEC	breast:	n/a
6	chr6:35403738-35403788	HCPEpiC	choroid plexus:	n/a
7	chr6:35387204-35387254	ECC-1	luminal epithelium:	n/a
8	chr6:35392736-35392786	A549	lung:	n/a
9	chr6:35395209-35395259	GM12892	blood:	n/a
10	chr6:35360715-35360765	AG04450	lung:	fetal
11	chr6:35348742-35348792	HCT-116	colon:	n/a
12	chr6:35351379-35351429	IMR90	lung:	fetal
13	chr6:35392736-35392786	SK-N-MC	brain:	n/a
14	chr6:35403738-35403788	AG10803	skin:	n/a
15	chr6:35392246-35392296	NHDF-neo	bronchial:	n/a
16	chr6:35392736-35392786	MCF-7	breast:	n/a
17	chr6:35392306-35392356	NB4	blood:	n/a
18	chr6:35392381-35392431	GM12892	blood:	n/a
19	chr6:35387204-35387254	HCT-116	colon:	n/a
20	chr6:35351379-35351429	A549	lung:	n/a
21	chr6:35395209-35395259	AG04450	lung:	fetal
22	chr6:35403738-35403788	HEK293	kidney:	embryo
23	chr6:35392736-35392786	CMK	blood:	n/a
24	chr6:35351379-35351429	SK-N-SH_RA	brain:	n/a
25	chr6:35354049-35354099	AG04449	skin:	fetal
26	chr6:35348742-35348792	HUVEC	blood vessel:	n/a
27	chr6:35370123-35370173	Hepatocyte	liver:	n/a
28	chr6:35348742-35348792	GM06990	blood:	n/a
29	chr6:35348742-35348792	BE2_C	brain:	n/a
30	chr6:35392736-35392786	ECC-1	luminal epithelium:	n/a
31	chr6:35360715-35360765	SK-N-SH	brain:	n/a
32	chr6:35392381-35392431	GM19239	blood:	n/a
33	chr6:35348742-35348792	HRCEpiC	kidney:	n/a
34	chr6:35392246-35392296	ECC-1	luminal epithelium:	n/a
35	chr6:35387204-35387254	NH-A	brain:	n/a
36	chr6:35392246-35392296	PANC-1	pancreas:	n/a
37	chr6:35354049-35354099	AG04450	lung:	fetal
38	chr6:35392246-35392296	HCM	heart:	n/a
39	chr6:35392381-35392431	A549	lung:	n/a
40	chr6:35360715-35360765	A549	lung:	n/a
41	chr6:35387204-35387254	MCF10A-Er-Src	breast:	n/a
42	chr6:35387204-35387254	ProgFib	skin:	n/a
43	chr6:35392736-35392786	HIPEpiC	eye:	n/a
44	chr6:35348742-35348792	RPTEC	kidney:	n/a
45	chr6:35392306-35392356	A549	lung:	n/a
46	chr6:35387204-35387254	NT2-D1	testis:	n/a
47	chr6:35395209-35395259	HAEpiC	amniotic membrane:	n/a
48	chr6:35403738-35403788	HRPEpiC	eye:	n/a
49	chr6:35392306-35392356	HRPEpiC	eye:	n/a
50	chr6:35370123-35370173	MCF10A-Er-Src	breast:	n/a

(count:117 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:35348461..35351306-chr6:35356739..35359433,2	MCF-7	breast:
2	chr6:35333771..35336611-chr6:35358813..35361070,2	MCF-7	breast:
3	chr6:35348461..35351306-chr6:35356739..35359433,2	MCF-7	breast:
4	chr6:35390370..35392093-chr6:35395033..35397221,2	K562	blood:
5	chr6:35269302..35271088-chr6:35360750..35362254,2	K562	blood:
6	chr6:35339706..35342371-chr6:35345441..35347439,2	K562	blood:
7	chr6:35337130..35339523-chr6:35342584..35344904,3	MCF-7	breast:
8	chr6:35352372..35354969-chr6:35356317..35359445,3	K562	blood:
9	chr6:35386381..35389895-chr6:35435947..35439155,3	K562	blood:
10	chr6:35328136..35331103-chr6:35385311..35387478,2	MCF-7	breast:
11	chr6:35369022..35371530-chr6:35380488..35382015,2	MCF-7	breast:
12	chr6:35335918..35339865-chr6:35340596..35344421,5	K562	blood:
13	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:
14	chr6:35364935..35367587-chr6:35369436..35372009,4	K562	blood:
15	chr6:35368369..35371007-chr6:35374165..35376691,3	K562	blood:
16	chr6:35403150..35406143-chr6:35419979..35421585,2	MCF-7	breast:
17	chr6:34758211..34761110-chr6:35347870..35350820,2	MCF-7	breast:
18	chr6:35328832..35330634-chr6:35333716..35335607,2	K562	blood:
19	chr6:35376249..35378829-chr6:35387490..35390068,2	K562	blood:
20	chr6:35330201..35332788-chr6:35338848..35341376,3	K562	blood:
21	chr6:35376249..35378829-chr6:35387490..35390068,2	K562	blood:
22	chr6:35334905..35337136-chr6:35354617..35357561,2	K562	blood:
23	chr6:35390370..35392093-chr6:35395033..35397221,2	K562	blood:
24	chr6:35310264..35312853-chr6:35403598..35406051,2	K562	blood:
25	chr6:35335918..35340012-chr6:35342665..35344421,4	K562	blood:
26	chr6:35358414..35360347-chr6:35370007..35371734,2	MCF-7	breast:
27	chr6:35342473..35346671-chr6:35347993..35350211,4	K562	blood:
28	chr6:35343876..35345476-chr6:35348637..35350211,2	K562	blood:
29	chr6:35343822..35346553-chr6:35354623..35356533,2	K562	blood:
30	chr6:35309674..35310633-chr6:35382681..35383602,6	K562	blood:
31	chr6:35341289..35343258-chr6:35436079..35437756,2	K562	blood:
32	chr6:35310293..35313222-chr6:35385909..35387818,2	MCF-7	breast:
33	chr6:35335380..35337947-chr6:35338128..35341057,2	MCF-7	breast:
34	chr6:35385294..35388987-chr6:35389022..35393579,4	K562	blood:
35	chr6:35386381..35389131-chr6:35434504..35437447,3	K562	blood:
36	chr6:35337473..35339598-chr6:35358141..35360010,2	K562	blood:
37	chr6:35364744..35367159-chr6:35371168..35373202,2	MCF-7	breast:
38	chr6:35357119..35359280-chr6:35381756..35383497,2	MCF-7	breast:
39	chr6:35343876..35345476-chr6:35348637..35350211,2	K562	blood:
40	chr6:35337473..35339598-chr6:35358141..35360010,2	K562	blood:
41	chr6:35376688..35379327-chr6:35465068..35467470,3	K562	blood:
42	chr6:35337130..35339523-chr6:35342584..35344904,3	MCF-7	breast:
43	chr6:35379744..35382549-chr6:35384456..35386159,2	K562	blood:
44	chr6:35324260..35326770-chr6:35333364..35334972,2	K562	blood:
45	chr6:35327410..35329043-chr6:35371700..35373772,2	MCF-7	breast:
46	chr6:35334905..35337136-chr6:35354617..35357561,2	K562	blood:
47	chr6:35307588..35310210-chr6:35369138..35372365,3	K562	blood:
48	chr6:35364935..35367587-chr6:35369436..35372009,4	K562	blood:
49	chr6:35386287..35387905-chr6:35391814..35393487,2	MCF-7	breast:
50	chr6:35374653..35376818-chr6:35385902..35387934,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FANCE-1	chr6:35394662-35394997	NONHSAT112179
2	lnc-PPARD-1	chr6:35397970-35398533	NONHSAT112180
3	lnc-PPARD-2	chr6:35399993-35400219	NONHSAT112181

No data

Variant related genes	Relation type
ENSG00000227154	TF binding region
ENSG00000227154	CpG island
ENSG00000116560	chromatin interactions
ENSG00000198755	chromatin interactions
ENSG00000023892	chromatin interactions
ENSG00000065029	chromatin interactions
ENSG00000112039	chromatin interactions
ENSG00000065060	chromatin interactions
ENSG00000112033	chromatin interactions
ENSG00000227154	chromatin interactions

Extended variants
information (count: 3061 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:3061 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9462076	chr6:35333799-35333800	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539295217	chr6:35333874-35333875	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs558012292	chr6:35333895-35333896	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs573090135	chr6:35333924-35333925	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs535803500	chr6:35333951-35333952	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs185308926	chr6:35333961-35333962	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573737397	chr6:35334201-35334202	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544315057	chr6:35334238-35334239	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189888319	chr6:35334248-35334249	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs371301555	chr6:35334250-35334251	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs116829806	chr6:35334263-35334264	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs181759567	chr6:35334289-35334290	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375114675	chr6:35334332-35334333	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs564765413	chr6:35334343-35334344	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs80118382	chr6:35334346-35334347	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs78562747	chr6:35334348-35334349	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75625695	chr6:35334349-35334350	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs187314363	chr6:35334353-35334354	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9470002	chr6:35334388-35334389	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561759418	chr6:35334389-35334390	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147904449	chr6:35334396-35334397	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs139935219	chr6:35334408-35334409	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs569039130	chr6:35334421-35334422	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs532947234	chr6:35334463-35334464	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs191017223	chr6:35334472-35334473	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs566711216	chr6:35334501-35334502	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs536931294	chr6:35334525-35334526	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs548027704	chr6:35334537-35334538	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs374841039	chr6:35334607-35334608	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs555673298	chr6:35334622-35334623	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs368956472	chr6:35334623-35334624	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs181013251	chr6:35334662-35334663	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533547322	chr6:35334681-35334682	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs60616912	chr6:35334688-35334689	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs185148076	chr6:35334806-35334807	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs149987507	chr6:35334881-35334882	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs577826880	chr6:35334899-35334900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs190251657	chr6:35334900-35334901	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs75187066	chr6:35334936-35334937	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs182854066	chr6:35334960-35334961	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs145167495	chr6:35334982-35334983	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs72911076	chr6:35334984-35334985	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs541238681	chr6:35335130-35335131	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs141754925	chr6:35335137-35335138	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs529653761	chr6:35335173-35335174	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs544235545	chr6:35335207-35335208	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs560346037	chr6:35335208-35335209	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs149132418	chr6:35335219-35335220	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs78852994	chr6:35335220-35335221	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs79226209	chr6:35335255-35335256	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
small cell lung cancer	17426248	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:3063 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
2	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
3	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:35325400-35335600	Weak transcription	Dnd41	blood
6	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
10	chr6:35328600-35335200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:35328800-35335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35328800-35336000	Weak transcription	HMEC	breast
13	chr6:35329000-35335200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:35329000-35335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:35329000-35335800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:35329000-35336600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:35329200-35334800	Weak transcription	Primary B cells from cord blood	blood
19	chr6:35329200-35335400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:35329200-35335400	Weak transcription	Esophagus	oesophagus
21	chr6:35329200-35335400	Weak transcription	Spleen	Spleen
22	chr6:35329200-35335400	Weak transcription	HepG2	liver
23	chr6:35329200-35336000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:35329200-35337800	Weak transcription	Ovary	ovary
25	chr6:35329600-35336000	Weak transcription	Pancreas	Pancrea
26	chr6:35329600-35338400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:35330400-35336000	Weak transcription	Primary T cells from cord blood	blood
28	chr6:35330600-35336000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:35331000-35335200	Weak transcription	NHLF	lung
30	chr6:35331000-35335800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:35331200-35335400	Weak transcription	NH-A	brain
32	chr6:35331200-35335600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:35331200-35336200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:35331200-35336400	Weak transcription	Thymus	Thymus
35	chr6:35331200-35337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:35331400-35334600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:35331400-35334800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:35331400-35335200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:35331400-35335200	Weak transcription	Lung	lung
41	chr6:35331400-35335400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:35331400-35335600	Weak transcription	Hela-S3	cervix
43	chr6:35331400-35335800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:35331400-35336000	Weak transcription	Brain Substantia Nigra	brain
45	chr6:35331400-35336000	Weak transcription	HUVEC	blood vessel
46	chr6:35331400-35337600	Weak transcription	Colonic Mucosa	Colon
47	chr6:35331400-35337800	Weak transcription	Aorta	Aorta
48	chr6:35331400-35337800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:35331400-35339200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:35331600-35333800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links