Variant report

Variant	rs182854066
Chromosome Location	chr6:35334960-35334961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35309244..35311800-chr6:35334738..35336722,3	MCF-7	breast:
2	chr6:35333771..35336611-chr6:35358813..35361070,2	MCF-7	breast:
3	chr6:35324260..35327105-chr6:35332379..35334972,3	K562	blood:
4	chr6:35328832..35330634-chr6:35333716..35335607,2	K562	blood:
5	chr6:35334905..35337136-chr6:35354617..35357561,2	K562	blood:
6	chr6:35334952..35336985-chr6:35437820..35439683,2	MCF-7	breast:
7	chr6:35324260..35326770-chr6:35333364..35334972,2	K562	blood:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
2	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
3	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:35325400-35335600	Weak transcription	Dnd41	blood
6	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
10	chr6:35328600-35335200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:35328800-35335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35328800-35336000	Weak transcription	HMEC	breast
13	chr6:35329000-35335200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:35329000-35335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:35329000-35335800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:35329000-35336600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:35329200-35335400	Weak transcription	Adipose Nuclei	Adipose
19	chr6:35329200-35335400	Weak transcription	Esophagus	oesophagus
20	chr6:35329200-35335400	Weak transcription	Spleen	Spleen
21	chr6:35329200-35335400	Weak transcription	HepG2	liver
22	chr6:35329200-35336000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:35329200-35337800	Weak transcription	Ovary	ovary
24	chr6:35329600-35336000	Weak transcription	Pancreas	Pancrea
25	chr6:35329600-35338400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:35330400-35336000	Weak transcription	Primary T cells from cord blood	blood
27	chr6:35330600-35336000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:35331000-35335200	Weak transcription	NHLF	lung
29	chr6:35331000-35335800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:35331200-35335400	Weak transcription	NH-A	brain
31	chr6:35331200-35335600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:35331200-35336200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:35331200-35336400	Weak transcription	Thymus	Thymus
34	chr6:35331200-35337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:35331400-35335200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:35331400-35335200	Weak transcription	Lung	lung
38	chr6:35331400-35335400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:35331400-35335600	Weak transcription	Hela-S3	cervix
40	chr6:35331400-35335800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:35331400-35336000	Weak transcription	Brain Substantia Nigra	brain
42	chr6:35331400-35336000	Weak transcription	HUVEC	blood vessel
43	chr6:35331400-35337600	Weak transcription	Colonic Mucosa	Colon
44	chr6:35331400-35337800	Weak transcription	Aorta	Aorta
45	chr6:35331400-35337800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:35331400-35339200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:35331600-35335000	Weak transcription	Fetal Intestine Large	intestine
48	chr6:35331600-35335200	Weak transcription	Fetal Intestine Small	intestine
49	chr6:35331600-35335200	Weak transcription	Left Ventricle	heart
50	chr6:35331600-35335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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