Variant report

Variant	nsv603808
Chromosome Location	chr6:77918905-77949743
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1073 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:1073 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12202018	chr6:77918905-77918906	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs569168927	chr6:77918918-77918919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544312616	chr6:77918928-77918929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540248667	chr6:77919218-77919219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558261540	chr6:77919293-77919294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs142416803	chr6:77919305-77919306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs116476214	chr6:77919362-77919363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116172446	chr6:77919364-77919365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9341648	chr6:77919414-77919415	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs181867955	chr6:77919438-77919439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs531146513	chr6:77919529-77919530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543230835	chr6:77919576-77919577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs373894468	chr6:77919593-77919594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561462534	chr6:77919749-77919750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528575078	chr6:77919766-77919767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557864829	chr6:77919770-77919771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547013804	chr6:77919790-77919791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183767654	chr6:77919836-77919837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs6453963	chr6:77919860-77919861	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs550481459	chr6:77919883-77919884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs188099971	chr6:77919909-77919910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs181397792	chr6:77919944-77919945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548056914	chr6:77919976-77919977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375937110	chr6:77919979-77919980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs386702874	chr6:77919987-77919988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs66654941	chr6:77919988-77919989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558579382	chr6:77919997-77919998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576786315	chr6:77920009-77920010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs537809486	chr6:77920022-77920023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs202033195	chr6:77920121-77920122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs186415025	chr6:77920168-77920169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575989587	chr6:77920231-77920232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543290216	chr6:77920235-77920236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs561315864	chr6:77920284-77920285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377584356	chr6:77920369-77920370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111564422	chr6:77920392-77920393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377664334	chr6:77920410-77920411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs57305564	chr6:77920415-77920416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529370865	chr6:77920431-77920432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs559705822	chr6:77920451-77920452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143174557	chr6:77920467-77920468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs573346585	chr6:77920489-77920490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs191606211	chr6:77920500-77920501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs9447996	chr6:77920513-77920514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565350521	chr6:77920530-77920531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532384978	chr6:77920548-77920549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373335559	chr6:77920564-77920565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs13201183	chr6:77920566-77920567	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs562470469	chr6:77920607-77920608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs529932052	chr6:77920615-77920616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77911200-77919600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:77916200-77925800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:77916400-77926200	Weak transcription	HUVEC	blood vessel
4	chr6:77921600-77922000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:77921600-77922600	Enhancers	Fetal Heart	heart
6	chr6:77921800-77922200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:77922600-77927800	Weak transcription	Fetal Heart	heart
8	chr6:77925800-77926600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:77926200-77926400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:77926200-77926400	Enhancers	HUVEC	blood vessel
11	chr6:77926400-77927400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:77927400-77928600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:77927800-77928200	Enhancers	Fetal Heart	heart
14	chr6:77930200-77935400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:77933000-77933200	Enhancers	Aorta	Aorta
16	chr6:77933200-77957000	Weak transcription	Aorta	Aorta
17	chr6:77939600-77939800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:77939800-77940000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:77941000-77941400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:77941200-77942000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:77941200-77942400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:77941400-77941800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:77941400-77941800	Enhancers	HSMMtube	muscle
24	chr6:77941400-77941800	Enhancers	NH-A	brain
25	chr6:77941600-77942200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:77941600-77942400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:77941800-77952600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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