Variant report

Variant	nsv605188
Chromosome Location	chr6:163697439-163772096
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:81)
LncRNA
region (count:28)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:81 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:163703327..163704855-chr6:163705499..163708258,2	MCF-7	breast:
2	chr6:163706595..163708112-chr6:163715318..163717921,2	MCF-7	breast:
3	chr6:163751446..163754906-chr6:163755143..163760328,4	K562	blood:
4	chr6:163714247..163716305-chr6:163717758..163719281,2	K562	blood:
5	chr6:163703768..163705367-chr6:163708087..163710426,3	K562	blood:
6	chr6:163765676..163767710-chr6:163771048..163773547,3	K562	blood:
7	chr6:163611808..163613497-chr6:163745930..163748775,2	MCF-7	breast:
8	chr6:163700094..163703003-chr6:163745162..163748023,2	MCF-7	breast:
9	chr6:163769098..163771002-chr6:163773045..163775280,2	MCF-7	breast:
10	chr6:163745590..163748829-chr6:163752310..163756417,4	MCF-7	breast:
11	chr6:163703768..163705367-chr6:163708087..163710426,3	K562	blood:
12	chr6:163765676..163767710-chr6:163771048..163773547,3	K562	blood:
13	chr6:163740696..163743616-chr6:163834506..163837495,2	K562	blood:
14	chr6:163696975..163699608-chr6:163701026..163703001,2	MCF-7	breast:
15	chr6:163702549..163703339-chr6:163745711..163746479,2	MCF-7	breast:
16	chr6:163760779..163762699-chr6:163768493..163770120,2	K562	blood:
17	chr6:163720388..163724051-chr6:163725114..163729572,4	K562	blood:
18	chr6:163730217..163732477-chr6:163833828..163835899,2	K562	blood:
19	chr6:163714247..163716305-chr6:163717758..163719281,2	K562	blood:
20	chr6:163730753..163733574-chr6:163734090..163735957,3	K562	blood:
21	chr6:163759847..163762654-chr6:163834528..163837162,2	MCF-7	breast:
22	chr6:163721065..163724051-chr6:163725255..163729572,3	K562	blood:
23	chr6:163757896..163760585-chr6:163774528..163776997,2	MCF-7	breast:
24	chr6:163728809..163730321-chr6:163730820..163733301,2	MCF-7	breast:
25	chr6:163714823..163718016-chr6:163831761..163835397,3	K562	blood:
26	chr6:163703768..163706009-chr6:163708926..163711873,3	K562	blood:
27	chr6:163724134..163725910-chr6:163833056..163836034,2	K562	blood:
28	chr6:163729760..163732219-chr6:163738312..163741230,2	MCF-7	breast:
29	chr6:163728809..163730321-chr6:163730820..163733301,2	MCF-7	breast:
30	chr6:163743568..163746151-chr6:163758711..163760918,2	K562	blood:
31	chr6:163721882..163723526-chr6:163759692..163762187,2	K562	blood:
32	chr6:163746176..163748803-chr6:163750592..163752123,2	K562	blood:
33	chr6:163700094..163703003-chr6:163745162..163748023,2	MCF-7	breast:
34	chr6:163732876..163734590-chr6:163745076..163747152,2	MCF-7	breast:
35	chr6:163601211..163603439-chr6:163745434..163748650,3	MCF-7	breast:
36	chr6:163711584..163713173-chr6:163716630..163718296,2	K562	blood:
37	chr6:163702549..163703339-chr6:163745711..163746479,2	MCF-7	breast:
38	chr6:163770647..163772827-chr6:163787676..163789505,2	K562	blood:
39	chr6:163762970..163765052-chr6:163833935..163835995,2	MCF-7	breast:
40	chr6:163718713..163720911-chr6:163732842..163734711,2	MCF-7	breast:
41	chr6:163721882..163723526-chr6:163759692..163762187,2	K562	blood:
42	chr6:163721622..163724213-chr6:163736108..163737934,2	K562	blood:
43	chr6:163750296..163752103-chr6:163834031..163836174,2	MCF-7	breast:
44	chr6:163743943..163749523-chr6:163832972..163838830,12	MCF-7	breast:
45	chr6:163733010..163737483-chr6:163739253..163742400,4	MCF-7	breast:
46	chr6:163703768..163706009-chr6:163708926..163711873,3	K562	blood:
47	chr6:163751446..163754906-chr6:163755143..163760328,4	K562	blood:
48	chr6:163718713..163720911-chr6:163732842..163734711,2	MCF-7	breast:
49	chr6:163755571..163762023-chr6:163831891..163837157,6	MCF-7	breast:
50	chr6:163742095..163749894-chr6:163832230..163837162,13	MCF-7	breast:

(count:28 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-2	chr6:163759374-163760555	XLOC_005909
2	lnc-AL078585.1-2	chr6:163767411-163767605	XLOC_005909
3	lnc-AL078585.1-11	chr6:163731017-163732002	NONHSAT115954
4	lnc-AL078585.1-11	chr6:163731017-163732002	NONHSAT115955
5	lnc-AL078585.1-2	chr6:163759731-163760555	XLOC_005909
6	lnc-AL078585.1-11	chr6:163741433-163741591	NONHSAT115955
7	lnc-AL078585.1-11	chr6:163731834-163731942	l_3312_chr6:163730351-163734222_testes
8	lnc-AL078585.1-11	chr6:163741433-163741591	NONHSAT115956
9	lnc-AL078585.1-11	chr6:163744423-163745101	NONHSAT115954
10	lnc-AL078585.1-2	chr6:163764587-163764622	XLOC_005909
11	lnc-AL078585.1-11	chr6:163745412-163745494	NONHSAT115954
12	lnc-AL078585.1-11	chr6:163741433-163741591	NONHSAT115954
13	lnc-AL078585.1-11	chr6:163744423-163745101	NONHSAT115955
14	lnc-AL078585.1-11	chr6:163739466-163739943	NONHSAT115956
15	lnc-AL078585.1-11	chr6:163734789-163734877	NONHSAT115954
16	lnc-AL078585.1-2	chr6:163765747-163766004	XLOC_005909
17	lnc-AL078585.1-11	chr6:163734789-163734877	NONHSAT115955
18	lnc-AL078585.1-11	chr6:163744423-163744897	NONHSAT115956
19	lnc-AL078585.1-11	chr6:163739826-163739943	NONHSAT115954
20	lnc-AL078585.1-11	chr6:163734157-163734222	l_3312_chr6:163730351-163734222_testes
21	lnc-AL078585.1-2	chr6:163761787-163764622	XLOC_005909
22	lnc-AL078585.1-11	chr6:163739826-163739943	NONHSAT115955
23	lnc-AL078585.1-2	chr6:163765747-163766004	XLOC_005909
24	lnc-AL078585.1-11	chr6:163745402-163745505	NONHSAT115955
25	lnc-AL078585.1-2	chr6:163767411-163768065	XLOC_005909
26	lnc-AL078585.1-2	chr6:163761441-163762062	XLOC_005909
27	lnc-AL078585.1-12	chr6:163755670-163755925	predAs_ge08_QKI_1
28	lnc-AL078585.1-11	chr6:163730352-163730874	l_3312_chr6:163730351-163734222_testes

No data

Variant related genes	Relation type
ENSG00000112531	chromatin interactions
ENSG00000225683	chromatin interactions
ENSG00000270419	chromatin interactions
NCS1	miRNA target sites
NCOR2	miRNA target sites

Extended variants
information (count: 3411 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:3411 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7750165	chr6:163697439-163697440	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs7750169	chr6:163697450-163697451	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs571334499	chr6:163697521-163697522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75239988	chr6:163697560-163697561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs550578888	chr6:163697595-163697596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs566917097	chr6:163697611-163697612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs146186511	chr6:163697614-163697615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75209685	chr6:163697615-163697616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111829955	chr6:163697639-163697640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs191615908	chr6:163697641-163697642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs148394737	chr6:163697665-163697666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184067050	chr6:163697726-163697727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561685198	chr6:163697732-163697733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs571542141	chr6:163697774-163697775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555895553	chr6:163697786-163697787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543533184	chr6:163697797-163697798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528869945	chr6:163697874-163697875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs557438495	chr6:163697875-163697876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187741111	chr6:163697923-163697924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs543003102	chr6:163697941-163697942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs116152862	chr6:163697963-163697964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532498224	chr6:163697979-163697980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192364608	chr6:163698020-163698021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs544966792	chr6:163698039-163698040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs115071825	chr6:163698082-163698083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs73025032	chr6:163698089-163698090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550391996	chr6:163698140-163698141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541666970	chr6:163698141-163698142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs560607608	chr6:163698206-163698207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs571922138	chr6:163698239-163698240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201410191	chr6:163698257-163698258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs150524949	chr6:163698282-163698283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546162437	chr6:163698290-163698291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs139926235	chr6:163698298-163698299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs149824785	chr6:163698342-163698343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200582027	chr6:163698406-163698407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527590135	chr6:163698419-163698420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552379363	chr6:163698451-163698452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185505888	chr6:163698468-163698469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547700334	chr6:163698496-163698497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537593742	chr6:163698503-163698504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs569716710	chr6:163698509-163698510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs112325843	chr6:163698515-163698516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs535727235	chr6:163698526-163698527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62428012	chr6:163698528-163698529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs62428013	chr6:163698530-163698531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs149681578	chr6:163698534-163698535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368323899	chr6:163698535-163698536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs147965102	chr6:163698548-163698549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs80051847	chr6:163698549-163698550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
Pancreatic cancer	17952125	CNVD
abnormal development	18461090	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Epilepsy	22083797	CNVD

Chromatin state (count:1238 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163682000-163701600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163686000-163706000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:163701000-163701400	Enhancers	Brain Anterior Caudate	brain
4	chr6:163701000-163702400	Enhancers	Left Ventricle	heart
5	chr6:163701200-163701600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:163701200-163702400	Enhancers	Spleen	Spleen
7	chr6:163701400-163705800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:163701600-163701800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:163701600-163705200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:163702000-163702400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:163702200-163702800	Enhancers	Placenta	Placenta
13	chr6:163702200-163703400	Enhancers	HUVEC	blood vessel
14	chr6:163702400-163705200	Weak transcription	Left Ventricle	heart
15	chr6:163702400-163710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:163702800-163703200	Weak transcription	Placenta	Placenta
17	chr6:163703200-163703600	Enhancers	Placenta	Placenta
18	chr6:163703400-163705000	Weak transcription	HUVEC	blood vessel
19	chr6:163704200-163704600	Enhancers	HSMMtube	muscle
20	chr6:163704600-163705000	Weak transcription	HSMMtube	muscle
21	chr6:163704800-163705400	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:163704800-163705600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:163705000-163705200	Weak transcription	Brain Substantia Nigra	brain
24	chr6:163705000-163706200	Enhancers	HUVEC	blood vessel
25	chr6:163705000-163706800	Enhancers	HSMMtube	muscle
26	chr6:163705200-163705400	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:163705200-163705400	Enhancers	Brain Substantia Nigra	brain
28	chr6:163705200-163705600	Enhancers	Left Ventricle	heart
29	chr6:163705200-163705800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:163705200-163705800	Enhancers	Fetal Muscle Leg	muscle
31	chr6:163705200-163706000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:163705200-163708000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr6:163705400-163706000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:163705400-163706400	Weak transcription	Brain Substantia Nigra	brain
35	chr6:163705400-163710200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:163705600-163709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:163705600-163711200	Weak transcription	Left Ventricle	heart
38	chr6:163705800-163706000	Enhancers	Fetal Heart	heart
39	chr6:163705800-163706200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:163705800-163706200	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:163705800-163706400	Enhancers	Brain Anterior Caudate	brain
42	chr6:163706000-163706600	Enhancers	Brain Hippocampus Middle	brain
43	chr6:163706000-163707800	Enhancers	Brain Angular Gyrus	brain
44	chr6:163706000-163707800	Enhancers	Brain Cingulate Gyrus	brain
45	chr6:163706000-163710000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:163706200-163707000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:163706200-163707000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:163706200-163707000	Enhancers	Fetal Muscle Leg	muscle
49	chr6:163706200-163711800	Weak transcription	HUVEC	blood vessel
50	chr6:163706400-163707000	Flanking Active TSS	Brain Anterior Caudate	brain

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