Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163696975..163699608-chr6:163701026..163703001,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10455921	0.83[EUR][1000 genomes]
rs1534938	0.92[ASN][1000 genomes]
rs2038091	0.86[EUR][1000 genomes]
rs2321509	0.92[ASN][1000 genomes]
rs2321510	0.92[ASN][1000 genomes]
rs2321511	0.92[ASN][1000 genomes]
rs4529279	0.92[ASN][1000 genomes]
rs4576224	0.92[ASN][1000 genomes]
rs4709690	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455888	0.80[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs6922089	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742060	0.84[ASN][1000 genomes]
rs7742574	0.87[EUR][1000 genomes]
rs7753173	0.84[ASN][1000 genomes]
rs7764754	0.89[EUR][1000 genomes]
rs9295217	0.84[ASN][1000 genomes]
rs9295219	0.92[ASN][1000 genomes]
rs9346954	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs9346955	0.86[CEU][hapmap]
rs9458769	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458774	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163682000-163701600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163686000-163706000	Weak transcription	Brain Angular Gyrus	brain

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