Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:163703768..163706009-chr6:163708926..163711873,3	K562	blood:
2	chr6:163703768..163705367-chr6:163708087..163710426,3	K562	blood:
3	chr6:163703327..163704855-chr6:163705499..163708258,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10455921	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1534938	0.92[ASN][1000 genomes]
rs2038091	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2321509	0.92[ASN][1000 genomes]
rs2321510	0.92[ASN][1000 genomes]
rs2321511	0.92[ASN][1000 genomes]
rs4529279	0.92[ASN][1000 genomes]
rs4576224	0.92[ASN][1000 genomes]
rs4709690	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455888	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7742060	0.84[ASN][1000 genomes]
rs7742574	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7750169	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753173	0.84[ASN][1000 genomes]
rs7764754	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9295217	0.84[ASN][1000 genomes]
rs9295219	0.92[ASN][1000 genomes]
rs9346954	0.85[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs9346955	0.86[ASW][hapmap];0.86[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9347735	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9458769	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458779	0.83[AMR][1000 genomes]
rs9458780	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163686000-163706000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:163701400-163705800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:163701600-163705200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:163702400-163705200	Weak transcription	Left Ventricle	heart
6	chr6:163702400-163710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:163703400-163705000	Weak transcription	HUVEC	blood vessel

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