Variant report

Variant	rs9458780
Chromosome Location	chr6:163717515-163717516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10455921	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2038091	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6922089	0.83[AMR][1000 genomes]
rs7742574	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7764754	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346955	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347735	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9458769	0.82[AMR][1000 genomes]
rs9458779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163707000-163718200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:163711400-163718200	Weak transcription	Psoas Muscle	Psoas
4	chr6:163713000-163720400	Weak transcription	Right Ventricle	heart
5	chr6:163714600-163720400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:163714600-163722600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:163714800-163717800	Weak transcription	HSMMtube	muscle
8	chr6:163714800-163718200	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:163715800-163717800	Enhancers	Fetal Heart	heart
10	chr6:163716400-163717800	Enhancers	Left Ventricle	heart
11	chr6:163716400-163720600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:163716600-163718200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:163716600-163718200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:163716600-163718800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:163716800-163718400	Weak transcription	Brain Germinal Matrix	brain
16	chr6:163717000-163718200	Weak transcription	Brain Anterior Caudate	brain
17	chr6:163717400-163720600	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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