Variant report

Variant	nsv613306
Chromosome Location	chr9:9311838-9338417
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 854 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:854 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10977651	chr9:9311838-9311839	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs554388780	chr9:9311849-9311850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs202063290	chr9:9311855-9311856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74354070	chr9:9311862-9311863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs575618170	chr9:9311906-9311907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs115337557	chr9:9311967-9311968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75583450	chr9:9311970-9311971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543283074	chr9:9312013-9312014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555218966	chr9:9312052-9312053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75545221	chr9:9312099-9312100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs530482464	chr9:9312113-9312114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs555058307	chr9:9312124-9312125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188895496	chr9:9312166-9312167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369258470	chr9:9312193-9312194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs574979356	chr9:9312205-9312206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs146511949	chr9:9312210-9312211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62532880	chr9:9312216-9312217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs150132111	chr9:9312228-9312229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138601959	chr9:9312266-9312267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs181620101	chr9:9312272-9312273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs35145855	chr9:9312273-9312274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35457532	chr9:9312301-9312302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113442026	chr9:9312305-9312306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186241570	chr9:9312336-9312337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546496036	chr9:9312349-9312350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547629423	chr9:9312408-9312409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs367822311	chr9:9312433-9312434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376031229	chr9:9312437-9312438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191016992	chr9:9312446-9312447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs539515443	chr9:9312451-9312452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs562993510	chr9:9312517-9312518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs531344998	chr9:9312518-9312519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs368220828	chr9:9312519-9312520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115529303	chr9:9312548-9312549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs149576774	chr9:9312576-9312577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562651598	chr9:9312586-9312587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs573847738	chr9:9312591-9312592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs116762503	chr9:9312633-9312634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs114127457	chr9:9312636-9312637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139183901	chr9:9312639-9312640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547867598	chr9:9312664-9312665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs182488912	chr9:9312705-9312706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530253482	chr9:9312720-9312721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567860685	chr9:9312747-9312748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372238851	chr9:9312810-9312811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs575453955	chr9:9312839-9312840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375342183	chr9:9312882-9312883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs551198781	chr9:9312883-9312884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs142976387	chr9:9312885-9312886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs548085902	chr9:9312886-9312887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9311600-9313400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:9313400-9313600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:9317400-9319600	Enhancers	Stomach Mucosa	stomach
4	chr9:9318400-9319400	Enhancers	Brain Cingulate Gyrus	brain
5	chr9:9318600-9318800	Enhancers	Brain Angular Gyrus	brain
6	chr9:9318600-9319000	Enhancers	Brain Anterior Caudate	brain
7	chr9:9318800-9319000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:9318800-9319000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr9:9318800-9319200	Flanking Active TSS	Brain Angular Gyrus	brain
10	chr9:9318800-9319200	Enhancers	Brain Hippocampus Middle	brain
11	chr9:9318800-9319200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:9318800-9319400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:9318800-9319400	Enhancers	Fetal Kidney	kidney
14	chr9:9318800-9319400	Enhancers	Fetal Lung	lung
15	chr9:9318800-9319600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:9319000-9319200	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr9:9319000-9319400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr9:9319000-9319400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:9319200-9319400	Active TSS	Brain Anterior Caudate	brain
20	chr9:9319200-9319600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:9319200-9319800	Enhancers	Brain Angular Gyrus	brain
22	chr9:9326000-9327600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:9326600-9327200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:9327000-9327200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:9327200-9331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:9327200-9331600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:9327600-9329800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:9329600-9330400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr9:9329600-9331800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr9:9329800-9330000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:9329800-9330200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:9329800-9330200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr9:9329800-9330600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:9329800-9333400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:9330000-9330200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr9:9330200-9331000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:9330200-9332200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:9330200-9335800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:9330400-9330800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:9330600-9331000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:9330800-9332000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr9:9331000-9331200	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr9:9331000-9331600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:9331000-9332000	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr9:9331000-9332200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr9:9331200-9332000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr9:9331200-9340000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr9:9331400-9332000	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr9:9331400-9332400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:9331600-9332400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links