Variant report

Variant	rs10977651
Chromosome Location	chr9:9311838-9311839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10116111	0.81[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap]
rs10117765	0.83[CHD][hapmap]
rs10120509	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10511523	0.80[CEU][hapmap]
rs10816074	0.84[CHB][hapmap]
rs10816075	0.84[CHB][hapmap]
rs10816090	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs12350625	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.84[YRI][hapmap]
rs1332796	0.80[CEU][hapmap];0.91[TSI][hapmap]
rs1332800	0.80[CEU][hapmap];0.91[TSI][hapmap]
rs1332806	0.88[TSI][hapmap]
rs1333105	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs1333121	0.92[CEU][hapmap]
rs1412881	0.80[CEU][hapmap];0.91[TSI][hapmap]
rs1547287	0.84[TSI][hapmap]
rs1889105	0.84[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap]
rs2065511	0.88[TSI][hapmap]
rs2065512	0.80[CEU][hapmap];0.88[TSI][hapmap]
rs2225596	0.80[CEU][hapmap];0.91[TSI][hapmap]
rs2382002	0.80[CEU][hapmap]
rs2780073	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs4146136	1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs4297075	0.84[CHB][hapmap]
rs4302899	0.84[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap]
rs4319157	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4357351	0.81[CHD][hapmap]
rs4492438	0.84[GIH][hapmap]
rs4568657	0.84[CHB][hapmap]
rs4626664	1.00[GIH][hapmap]
rs4742582	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4742585	0.80[CEU][hapmap];0.87[TSI][hapmap]
rs7850556	0.80[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs7872553	0.84[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap]
rs7874373	0.82[JPT][hapmap]
rs9299090	0.94[GIH][hapmap]
rs9299091	0.80[CHB][hapmap]
rs950196	0.87[TSI][hapmap]
rs9644896	0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv892257	chr9:9304839-9349679	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv613306	chr9:9311838-9338417	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
13	nsv892259	chr9:9311838-9348102	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10977651	GSTT1	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9311600-9313400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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