Variant report

Variant	rs12350625
Chromosome Location	chr9:9290343-9290344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10116111	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10116635	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs10118203	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs10120509	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs10125274	0.92[JPT][hapmap]
rs10759052	0.81[CHB][hapmap]
rs10816064	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs10816066	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10816067	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10816068	0.88[CHB][hapmap]
rs10816071	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs10816074	0.88[CHB][hapmap]
rs10816075	0.88[CHB][hapmap]
rs10816076	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10816090	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs10977651	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1333105	0.93[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs1333121	0.91[CEU][hapmap]
rs1889105	0.82[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap]
rs4146135	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4146136	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4146137	0.88[CHB][hapmap]
rs4297075	0.88[CHB][hapmap]
rs4302899	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4319157	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4357351	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4457389	0.82[CHB][hapmap]
rs4492438	0.87[CHB][hapmap]
rs4568657	0.87[CHB][hapmap]
rs4626664	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs4626665	0.81[JPT][hapmap]
rs4628307	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4742582	0.87[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs6477383	0.89[CHB][hapmap]
rs6477384	0.89[CHB][hapmap]
rs7031995	0.82[CHB][hapmap]
rs7035832	0.81[CHB][hapmap]
rs7858545	0.84[CEU][hapmap]
rs7872553	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7874373	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs9299090	0.81[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv1030899	chr9:9250314-9291197	Enhancers	n/a	n/a	inside rSNPs	n/a
7	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv613304	chr9:9263980-9295281	Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv613305	chr9:9263980-9310461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv466129	chr9:9264932-9297697	Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
14	nsv969749	chr9:9283460-9291430	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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