Variant report

Variant	rs7874373
Chromosome Location	chr9:9258792-9258793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10116111	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10116635	0.94[JPT][hapmap]
rs10117765	0.82[JPT][hapmap]
rs10118203	0.89[JPT][hapmap]
rs10120509	0.83[JPT][hapmap]
rs10125274	0.87[JPT][hapmap]
rs10816064	0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs10816066	0.94[JPT][hapmap];0.82[YRI][hapmap]
rs10816067	0.94[JPT][hapmap];0.82[YRI][hapmap]
rs10816071	0.94[JPT][hapmap]
rs10816075	0.88[JPT][hapmap]
rs10816076	0.84[JPT][hapmap]
rs10816090	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10977651	0.82[JPT][hapmap]
rs12350625	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1333105	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1889105	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs4146135	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4146136	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4302899	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4319157	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4357351	0.88[JPT][hapmap]
rs4492438	1.00[CHB][hapmap]
rs4626664	0.89[JPT][hapmap]
rs4626665	0.83[JPT][hapmap]
rs4628307	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4742582	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs6477383	0.89[JPT][hapmap]
rs6477384	0.89[JPT][hapmap]
rs7872553	0.94[JPT][hapmap]
rs9299090	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv892253	chr9:9249912-9287321	Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv1030899	chr9:9250314-9291197	Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links